The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. cco-miR159at

Accession: B14508707

Entry

ID: cco-miR159at
Alias: F279.L000303.A25
Sequence: UGGACUGAAGGGAGCUCCUCC
Description: microRNA MIR159 predicted
Species: 补骨脂  Species latin name: Cullen corylifolium
TCM Name: Buguzhi(补骨脂)  
TCM Resource (Sample number): 补骨脂(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

cco-miR159at; gma-miR159an; lpu-miR159ax; ssu-miR159k;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0031   18.1   0.0  cm      166      185 ~.           1          20 + ~. 1.00    5' 0.60
                                                                  ???????  ????????    NC
                                                           ~~~~~~~>>>>>>>-->>>>>>>>::: CS
                                                MIR159  13 <[153]*UGGAcuGAAGGGAGCUCCuu 185
                                                                  UGGACUGAAGGGAGCUCCU+
                                           ssu-miR159k   1 <[  0]*UGGACUGAAGGGAGCUCCUC 20
                                                           .......******************** PP

Targets

Predicted by TargetFinder

NM_001083592 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001276418 ;   NM_005012 ;   NM_014866 ;   NM_014906 ;   NM_024923 ;   NM_173626 ;   NR_048561 ;  

Predicted by TAPIR

NM_001083592 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001243540 ;   NM_001243541 ;   NM_001276418 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_003594 ;   NM_005012 ;   NM_014866 ;   NM_014906 ;   NM_020202 ;   NM_022895 ;   NM_032970 ;   NM_173626 ;   NR_048561 ;   NR_104409 ;   NR_121582 ;