The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR8
  5. tki-miR8a

Accession: B67858102

Entry

ID: tki-miR8a
Alias: F4014.M000001.A25
Sequence: UAAUACUGCCUGGUAAUGAUGA
Description: mir-8/mir-141/mir-200 microRNA precursor family predicted,partially
Species: 栝楼  Species latin name: Trichosanthes kirilowii
TCM Name: Tianhuafen(天花粉)   Gualou(瓜蒌)   Gualouzi(瓜蒌子)   Chaogualouzi(炒瓜蒌子)   Gualoupi(瓜蒌皮)  
TCM Resource (Sample number): 瓜蒌皮(1) 瓜蒌(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR8a; acr-miR8a; bca-miR8a; bch-miR8a; cfe-miR8a; cit-miR8a; cmd-miR8a; fmu-miR8a; fsu-miR8a; gel-miR8a; hcr-miR8a; poe-miR8a; ppr-miR8a; pvl-miR8a; sdi-miR8a; sgi-miR8a; sor-miR8a; tki-miR8a; vph-miR8a;

Rfam Alignments

>> mir-8  mir-8/mir-141/mir-200 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   20.9   0.0  cm       48       69 ~~           1          22 + ~~ 1.00 5'&3' 0.36
                                                                ?????????   ???? ?????      NC
                                                          ~~~~~~>>>>>>>>>--->>>>->>>>>~~~~~ CS
                                                 mir-8  1 <[47]*uAAcACUGcCUGGUAAuGAUGg*[7]> 76
                                                                UAA ACUGCCUGGUAAUGAUG
                                             vph-miR8a  1 <[ 0]*UAAUACUGCCUGGUAAUGAUGA*[0]> 22
                                                          ......9*********************..... PP

Targets

Predicted by TargetFinder

NM_001164549 ;  

Predicted by TAPIR

NM_001042494 ;   NM_001042495 ;   NM_001042496 ;   NM_001042497 ;   NM_001242946 ;   NM_001242948 ;   NM_001365088 ;   NM_005135 ;   NM_017549 ;   NM_133647 ;