The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. tki-miR30af

Accession: B67849420

Entry

ID: tki-miR30af
Alias: F3769.M000046.A11
Sequence: UGUAAACAUCCCCGACUGGAAA
Description: mir-30 microRNA precursor predicted,partially
Species: 栝楼  Species latin name: Trichosanthes kirilowii
TCM Name: Tianhuafen(天花粉)   Gualou(瓜蒌)   Gualouzi(瓜蒌子)   Chaogualouzi(炒瓜蒌子)   Gualoupi(瓜蒌皮)  
TCM Resource (Sample number): 瓜蒌皮(1) 瓜蒌(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30ag; asc-miR30ae; bca-miR30ac; bch-miR30ad; cci-miR30ab; cfe-miR30ae; cit-miR30aq; cmd-miR30ah; cof-miR30c; csp-miR30c; esn-miR30b; fmu-miR30ab; hcr-miR30af; ljp-miR30ab; llu-miR30b; poe-miR30ah; ppr-miR30af; pvl-miR30b; sar-miR30b; sch-miR30a; sdf-miR30d; sln-miR30b; sor-miR30ap; tch-miR30ad; tki-miR30af; vph-miR30ac; zof-miR30ad;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0044   20.9   0.0  cm        1       22 [~           1          22 + [~ 1.00    3' 0.45
                         ??????????  ?????????       NC
                        :<<<<<<<<<<--<<<<<<<<<~~~~~~ CS
              mir-30  1 UGuAAACAUCcUcGACuGgaAG*[38]> 60
                        UGUAAACAUCC+CGACUGGAA
         zof-miR30ad  1 UGUAAACAUCCCCGACUGGAAA*[ 0]> 22
                        **********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR