The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. tki-miR27b

Accession: B67827065

Entry

ID: tki-miR27b
Alias: F3421.M000061.A25
Sequence: UUCACAGUGGCUAAGUUCUGCA
Description: microRNA mir-27 predicted
Species: 栝楼  Species latin name: Trichosanthes kirilowii
TCM Name: Tianhuafen(天花粉)   Gualou(瓜蒌)   Gualouzi(瓜蒌子)   Chaogualouzi(炒瓜蒌子)   Gualoupi(瓜蒌皮)  
TCM Resource (Sample number): 瓜蒌皮(1) 瓜蒌(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27c; Bswzz-miR27b; aar-miR27b; asc-miR27b; bca-miR27b; bch-miR27b; bpi-miR27b; cci-miR27b; cfe-miR27d; cit-miR27am; cmd-miR27ae; cmi-miR27b; cof-miR27b; cri-miR27b; csu-miR27b; epr-miR27b; fmu-miR27b; fsu-miR27b; gel-miR27b; hcr-miR27af; ljp-miR27b; poe-miR27af; ppr-miR27b; psu-miR27b; pvl-miR27c; sch-miR27b; sdf-miR27b; sor-miR27ah; tch-miR27b; tki-miR27b; zof-miR27b;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00056   21.8   0.0  cm       56       77 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                                 ?????  ???????????          NC
                                                           ~~~~~~>>>>>-->>>>>>>>>>>::::~~~~~ CS
                                                 mir-27  1 <[55]*uUCACAGuGGCUAAGuuCuGCu*[6]> 83
                                                                 UUCACAGUGGCUAAGUUCUGC+
                                             zof-miR27b  1 <[ 0]*UUCACAGUGGCUAAGUUCUGCA*[0]> 22
                                                           ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001002266 ;   NM_001282866 ;   NM_003566 ;   NM_021916 ;   NM_145021 ;   NR_104664 ;  

Predicted by TAPIR

NM_001002266 ;   NM_001282866 ;   NM_021916 ;   NM_178527 ;   NM_182973 ;