The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. tki-miR133d

Accession: B68085901

Entry

ID: tki-miR133d
Alias: F12642.N000065.A25
Sequence: UUUGGUCCCCUUCAACCAGCUGU
Description: mir-133 microRNA precursor family predicted,partially
Species: 栝楼  Species latin name: Trichosanthes kirilowii
TCM Name: Tianhuafen(天花粉)   Gualou(瓜蒌)   Gualouzi(瓜蒌子)   Chaogualouzi(炒瓜蒌子)   Gualoupi(瓜蒌皮)  
TCM Resource (Sample number): 瓜蒌皮(1) 瓜蒌(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR133b; Bswzz-miR133f; aar-miR133b; acr-miR133f; asc-miR133m; bca-miR133h; bhi-miR133; bpi-miR133as; car-miR133b; cci-miR133l; cde-miR133b; cfe-miR133o; cit-miR133ce; cmd-miR133bb; cmi-miR133m; cmj-miR133d; cmo-miR133; cof-miR133j; cph-miR133d; cri-miR133b; csp-miR133g; csu-miR133l; cya-miR133b; ehu-miR133b; eja-miR133c; epr-miR133d; esn-miR133d; fmu-miR133d; fsu-miR133f; fth-miR133; gel-miR133f; gja-miR133b; hcr-miR133ba; hof-miR133d; lgr-miR133f; lji-miR133b; ljp-miR133j; lln-miR133; llu-miR133e; mal-miR133c; nnu-miR133d; nte-miR133b; pgi-miR133b; poe-miR133bb; ppr-miR133c; psu-miR133d; pvl-miR133i; sar-miR133g; sba-miR133b; sch-miR133k; sdf-miR133g; sdi-miR133; sgi-miR133c; sln-miR133f; sor-miR133cf; tch-miR133au; tfa-miR133c; tki-miR133d; vtr-miR133b; zof-miR133o;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   2.4e-05   25.5   0.0  cm       51       73 ~~           1          23 + ~~ 1.00 5'&3' 0.52
                                                              ??????     ?? ???????         NC
                                                        ~~~~~~>>>>>>----->>->>>>>>>--~~~~~~ CS
                                             mir-133  1 <[50]*UuUGGUCCCCUUCAACCAGCuGU*[14]> 87
                                                              UUUGGUCCCCUUCAACCAGCUGU
                                         zof-miR133o  1 <[ 0]*UUUGGUCCCCUUCAACCAGCUGU*[ 0]> 23
                                                        ......***********************...... PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001308394 ;   NM_001364885 ;   NM_003278 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;  

Predicted by TAPIR

NM_001145153 ;   NM_001308394 ;   NM_001364885 ;   NM_003278 ;   NM_004853 ;   NM_022744 ;   NM_024791 ;   NM_025081 ;   NM_144649 ;