The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. tfa-miR1j

Accession: B66743597

Entry

ID: tfa-miR1j
Alias: F5708.L000113.A25
Sequence: UGGAAUGUAAAGAAGUAUGUA
Description: mir-1 microRNA precursor family predicted,partially
Species: 款冬  Species latin name: Tussilago farfara
TCM Name: Kuandonghua(款冬花)  
TCM Resource (Sample number): 款冬花(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1m; Bsr-miR1c; Bswzz-miR1m; abs-miR1e; acr-miR1m; aeu-miR1e; aha-miR1c; aox-miR1b; asc-miR1n; bca-miR1o; bmj-miR1; bpi-miR1o; car-miR1d; cba-miR1h; cci-miR1n; cde-miR1f; cfe-miR1q; cit-miR1bl; clo-miR1c; cma-miR1g; cmd-miR1az; cmi-miR1k; cof-miR1l; cri-miR1g; csu-miR1m; eja-miR1d; epr-miR1f; fmu-miR1n; fsu-miR1g; gel-miR1k; hcr-miR1av; lch-miR1e; lgr-miR1l; ljc-miR1e; lji-miR1i; ljp-miR1k; llu-miR1n; nja-miR1f; nnu-miR1i; nsc-miR1f; nte-miR1e; pas-miR1e; pch-miR1c; pfr-miR1f; poe-miR1be; ppr-miR1i; psu-miR1h; pvl-miR1m; rcd-miR1b; rte-miR1c; run-miR1d; sad-miR1g; sar-miR1m; sba-miR1h; sch-miR1o; sdf-miR1j; sln-miR1g; sor-miR1bh; tch-miR1av; tfa-miR1j; tja-miR1d; tki-miR1k; twi-miR1d; zof-miR1u;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.004   20.6   0.0  cm       49       69 ~~           1          21 + ~~ 1.00 5'&3' 0.29
                                                              ??? ?????????????????      NC
                                                        ~~~~~~>>>->>>>>>>>>>>>>>>>>~~~~~ CS
                                               mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGua*[8]> 77
                                                              UGGAAUGUAAAGAAGUAUGUA
                                           zof-miR1u  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUA*[0]> 21
                                                        ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000655 ;   NM_000892 ;   NM_001143957 ;   NM_001145373 ;   NM_001163391 ;   NM_001174156 ;   NM_001201477 ;   NM_001318394 ;   NM_001318396 ;   NM_001368124 ;   NM_005562 ;   NM_016255 ;   NM_018092 ;   NM_030784 ;   NM_144660 ;   NR_015436 ;   NR_029467 ;   NR_103535 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;  

Predicted by TAPIR

NM_000892 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001166018 ;   NM_001318394 ;   NM_001318396 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NM_015028 ;   NM_016255 ;   NR_015436 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;