The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. tfa-miR1h

Accession: B66665099

Entry

ID: tfa-miR1h
Alias: F574.N000220.A11
Sequence: UGGAAUGUAAAGAAGUAUGGAGU
Description: mir-1 microRNA precursor family predicted,partially
Species: 款冬  Species latin name: Tussilago farfara
TCM Name: Kuandonghua(款冬花)  
TCM Resource (Sample number): 款冬花(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1j; acr-miR1i; bca-miR1i; csp-miR1i; csu-miR1i; fmu-miR1h; lfo-miR1d; ljc-miR1d; llu-miR1i; poe-miR1as; sgl-miR1c; tfa-miR1h; tmo-miR1d; zof-miR1l;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0036   21.0   0.0  cm       49       71 ~~           1          23 + ~~ 1.00 5'&3' 0.35
                               ??? ??????????????????       NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>>:~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuagu*[6]> 77
                               UGGAAUGUAAAGAAGUAUG AGU
            zof-miR1l  1 <[ 0]*UGGAAUGUAAAGAAGUAUGGAGU*[0]> 23
                         ......***********************..... PP

Targets

Predicted by TargetFinder

NM_000892 ;   NM_001201477 ;   NM_001318394 ;   NM_001318396 ;   NM_018092 ;  

Predicted by TAPIR