The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR168
  5. rja-miR168b

Accession: B57184544

Entry

ID: rja-miR168b
Alias: F377.L000002.A3D
Sequence: CCCGCCUUGCAUCAACUGAAU
Description: MIR168 putative
Species: 虎杖  Species latin name: Reynoutria japonica
TCM Name: Huzhang(虎杖)  
TCM Resource (Sample number): 虎杖(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR168a-3p; ath-miR168a-3p; bra-miR168b-3p; bra-miR168c-3p; cas-miR168; csi-miR168-3p; fve-miR168-3p; mtr-miR168c-3p; ptc-miR168a-3p; ptc-miR168b-3p; sly-miR168b-3p;

Bencao Homologs

ave-miR168b; bca-miR168b; bhi-miR168b; cco-miR168b; cja-miR168b; cmd-miR168b; csu-miR168a; ehu-miR168a; est-miR168b; fsu-miR168b; gpe-miR168b; hcr-miR168b; hof-miR168; lfo-miR168b; nnu-miR168b; psu-miR168; rja-miR168b; sbc-miR168b; sch-miR168b; sdi-miR168b; smi-miR168b;

Rfam Alignments

>> MIR168  microRNA MIR168
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.002   18.4   0.0  cm       96      116 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                                                  ???? ??????????  ????       NC
                                                            ~~~~~~>>>>->>>>>>>>>>-->>>>~~~~~~ CS
                                                 MIR168   1 <[95]*CCCGCCUUGCAUCAAcUGAAu*[17]> 133
                                                                  CCCGCCUUGCAUCAACUGAAU
                                            smi-miR168b   1 <[ 0]*CCCGCCUUGCAUCAACUGAAU*[ 0]> 21
                                                            ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001367973 ;   NM_018644 ;   NM_054025 ;  

Predicted by TAPIR

NM_014818 ;