The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. rja-miR159ar

Accession: B57189776

Entry

ID: rja-miR159ar
Alias: F424.M000024.A11
Sequence: CUUGGACUGAAGGGAGCUCCCU
Description: microRNA MIR159 predicted
Species: 虎杖  Species latin name: Reynoutria japonica
TCM Name: Huzhang(虎杖)  
TCM Resource (Sample number): 虎杖(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

bca-miR159k; ccs-miR159ao; cmd-miR159h; hof-miR159h; nnu-miR159ap; rcr-miR159ar; rja-miR159ar; sgl-miR159l; sse-miR159c;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.001   20.2   0.0  cm      164      185 ~~           1          22 + ~~ 1.00 5'&3' 0.59
                                   ???????  ????????          NC
                          ~~~~~~~-->>>>>>>-->>>>>>>>:::~~~~~~ CS
               MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCCuu*[11]> 196
                                  UUGGACUGAAGGGAGCUCC+U
          sse-miR159c   1 <[  0]*CUUGGACUGAAGGGAGCUCCCU*[ 0]> 22
                          .......**********************...... PP

Targets

Predicted by TargetFinder

NM_001171740 ;   NM_001171741 ;   NM_016210 ;  

Predicted by TAPIR

NM_001171740 ;   NM_001171741 ;   NM_016210 ;   NR_038360 ;