The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. rcr-miR159av

Accession: B57000835

Entry

ID: rcr-miR159av
Alias: F8826.K000052.A11*
Sequence: UUUGGAUUGAAGGGAGCUUU
Description: microRNA MIR159 predicted
Species: 大花红景天  Species latin name: Rhodiola crenulata
TCM Name: Hongjingtian(红景天)  
TCM Resource (Sample number): 红景天(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR159j; apl-miR159bc; cco-miR159bc; cof-miR159k; csm-miR159g; cso-miR159h; csp-miR159aj; csu-miR159g; ehu-miR159i; gja-miR159e; gma-miR159at; lfo-miR159i; llc-miR159k; lpu-miR159bl; mca-miR159ar; nnu-miR159av; pav-miR159as; pcn-miR159j; por-miR159az; psu-miR159ao; pvl-miR159an; rch-miR159al; rcr-miR159av; rja-miR159av; smi-miR159aq; sto-miR159aq; tci-miR159h;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0077   16.5   0.0  cm      164      181 ~.           1          18 + ~. 1.00    5' 0.44
                       ???????  ??????? NC
              ~~~~~~~-->>>>>>>-->>>>>>> CS
   MIR159  14 <[150]*uUUGGAcuGAAGGGAGCU 181
                     UUUGGA UGAAGGGAGCU
tci-miR159h   1 <[  0]*UUUGGAUUGAAGGGAGCU 18
              .......****************** PP

Targets

Predicted by TargetFinder

NM_001167671 ;   NM_001167672 ;   NM_001195272 ;   NM_001249 ;   NM_001271634 ;   NM_001321985 ;   NM_001321986 ;   NM_001321987 ;   NM_001321988 ;   NM_001351444 ;   NM_005444 ;   NM_005578 ;   NM_006456 ;   NM_014906 ;   NM_015021 ;   NM_054107 ;   NM_138694 ;   NM_170724 ;   NR_048561 ;   NR_073390 ;   NR_135572 ;   NR_146089 ;  

Predicted by TAPIR

NM_001080534 ;   NM_001135109 ;   NM_001195272 ;   NM_001206671 ;   NM_001206672 ;   NM_001249 ;   NM_001321618 ;   NM_001321985 ;   NM_001329919 ;   NM_001346690 ;   NM_001346691 ;   NM_001346692 ;   NM_001346694 ;   NM_001522 ;   NM_003609 ;   NM_024557 ;   NM_138694 ;   NM_170724 ;   NR_134315 ;   NR_135572 ;   NR_144497 ;