The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. pvl-miR159at

Accession: B56016783

Entry

ID: pvl-miR159at
Alias: F26587.L000021.A11*
Sequence: UUUGGAUUGAAGGGAGCUCCG
Description: microRNA MIR159 predicted
Species: 夏枯草  Species latin name: Prunella vulgaris
TCM Name: Xiakucao(夏枯草)  
TCM Resource (Sample number): 夏枯草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR159d; apl-miR159br; ccs-miR159be; cmd-miR159m; cmj-miR159g; gbi-miR159r; hcr-miR159l; ini-miR159o; pav-miR159az; por-miR159bm; pvl-miR159at;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   19.6   0.0  cm      164      183 ~.           1          20 + ~. 1.00    5' 0.50
                                   ???????  ????????  NC
                          ~~~~~~~-->>>>>>>-->>>>>>>>: CS
               MIR159  13 <[151]*uUUGGAcuGAAGGGAGCUCC 183
                                 UUUGGA UGAAGGGAGCUCC
         pvl-miR159at   1 <[  0]*UUUGGAUUGAAGGGAGCUCC 20
                          .......******************** PP

Targets

Predicted by TargetFinder

NM_001195272 ;   NM_001271634 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_005444 ;   NM_031912 ;   NM_138694 ;   NM_170724 ;   NM_181519 ;   NR_073390 ;  

Predicted by TAPIR

NM_001271634 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_005444 ;   NM_031912 ;   NM_181519 ;   NR_073390 ;   NR_146089 ;