The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. spo-miR1c

Accession: B63629232

Entry

ID: spo-miR1c
Alias: F574.L000026.A11
Sequence: UGGAAUGUAAAGAAGUAUGUU
Description: mir-1 microRNA precursor family predicted,partially
Species: 紫萍  Species latin name: Spirodela polyrhiza
TCM Name: Fuping(浮萍)  
TCM Resource (Sample number): 浮萍(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

ala-miR1a; bpi-miR1a; cit-miR1ac; cmd-miR1ac; hcr-miR1aa; poe-miR1ac; sdf-miR1b; sor-miR1ac; spo-miR1c;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.005   20.3   0.0  cm       49       68 ~.           1          20 + ~. 1.00    5' 0.30
                               ??? ???????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>> CS
                mir-1 10 <[39]*UGGAAUgUAAaGAAGuAUGu 68
                               UGGAAUGUAAAGAAGUAUGU
            spo-miR1c  1 <[ 0]*UGGAAUGUAAAGAAGUAUGU 20
                         ......******************** PP

Targets

Predicted by TargetFinder

NM_000834 ;   NM_001143957 ;   NM_001272069 ;   NM_001362969 ;   NM_005562 ;   NM_016010 ;   NM_017752 ;   NM_030784 ;   NM_153442 ;   NR_003679 ;   NR_029780 ;   NR_136192 ;   NR_136193 ;   NR_136194 ;   NR_136197 ;   NR_136198 ;   NR_136199 ;   NR_136200 ;   NR_136201 ;   NR_156423 ;  

Predicted by TAPIR

NM_000834 ;   NM_001362969 ;   NM_005562 ;   NM_016010 ;   NM_017752 ;   NR_003679 ;   NR_136192 ;   NR_136193 ;   NR_136194 ;   NR_136197 ;   NR_136198 ;   NR_136199 ;   NR_136200 ;   NR_136201 ;   NR_156423 ;