Entry

ID: sor-miR1ac
Alias: F574.L000026.A11
Sequence: UGGAAUGUAAAGAAGUAUGUU
Description: mir-1 microRNA precursor family predicted,partially
Species: 豨莶 Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

ala-miR1a; bpi-miR1a; cit-miR1ac; cmd-miR1ac; hcr-miR1aa; poe-miR1ac; sdf-miR1b; sor-miR1ac; spo-miR1c;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.005   20.3   0.0  cm       49       68 ~.           1          20 + ~. 1.00    5' 0.30
                               ??? ???????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>> CS
                mir-1 10 <[39]*UGGAAUgUAAaGAAGuAUGu 68
                               UGGAAUGUAAAGAAGUAUGU
            spo-miR1c  1 <[ 0]*UGGAAUGUAAAGAAGUAUGU 20
                         ......******************** PP

Targets

Predicted by TargetFinder

NM_000834 ; NM_001143957 ; NM_001272069 ; NM_001362969 ; NM_005562 ; NM_016010 ; NM_017752 ; NM_030784 ; NM_153442 ; NR_003679 ; NR_029780 ; NR_136192 ; NR_136193 ; NR_136194 ; NR_136197 ; NR_136198 ; NR_136199 ; NR_136200 ; NR_136201 ; NR_156423 ;

Predicted by TAPIR

NM_000834 ; NM_001362969 ; NM_005562 ; NM_016010 ; NM_017752 ; NR_003679 ; NR_136192 ; NR_136193 ; NR_136194 ; NR_136197 ; NR_136198 ; NR_136199 ; NR_136200 ; NR_136201 ; NR_156423 ;

The Bencao (Herbal) Database（本草数据库）

Accession: B62919484