The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. ljn-miR30e

Accession: B42306721

Entry

ID: ljn-miR30e
Alias: F3769.O000194.A25
Sequence: UGUAAACAUCCUCGACUGGAAGCU
Description: mir-30 microRNA precursor predicted,partially
Species: 忍冬  Species latin name: Lonicera japonica
TCM Name: Rendongteng(忍冬藤)   Jinyinhua(金银花)  
TCM Resource (Sample number): 金银花(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30as; Bswzz-miR30g; acr-miR30h; asc-miR30ak; bca-miR30ag; bch-miR30al; bhi-miR30af; bpi-miR30f; car-miR30b; cas-miR30c; cba-miR30h; cci-miR30aj; cfe-miR30al; cit-miR30cq; cmd-miR30ay; cso-miR30c; csp-miR30h; csu-miR30g; eja-miR30e; epr-miR30g; esn-miR30g; fmu-miR30ah; fsu-miR30e; gel-miR30e; gpe-miR30a; hcr-miR30au; kga-miR30c; lba-miR30d; lch-miR30d; ljc-miR30e; lji-miR30e; ljn-miR30e; ljp-miR30ah; llu-miR30e; nnu-miR30f; pcn-miR30b; pfr-miR30f; poe-miR30bi; ppr-miR30aj; psu-miR30e; pvl-miR30g; run-miR30c; sar-miR30h; sbc-miR30e; sca-miR30a; sch-miR30e; sdf-miR30j; sgi-miR30ai; sln-miR30g; sor-miR30cn; tch-miR30aj; tfa-miR30f; tki-miR30al; vph-miR30aj; zof-miR30am;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   2.3e-05   29.5   0.0  cm        1       24 [~           1          24 + [~ 1.00    3' 0.46
                                                          ??????????  ???????????       NC
                                                         :<<<<<<<<<<--<<<<<<<<<<<~~~~~~ CS
                                               mir-30  1 UGuAAACAUCcUcGACuGgaAGCu*[36]> 60
                                                         UGUAAACAUCCUCGACUGGAAGCU
                                          zof-miR30am  1 UGUAAACAUCCUCGACUGGAAGCU*[ 0]> 24
                                                         ************************...... PP

Targets

Predicted by TargetFinder

NR_034130 ;  

Predicted by TAPIR

NR_029846 ;