The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. ljn-miR10d

Accession: B42320354

Entry

ID: ljn-miR10d
Alias: F8347.N000090.A25
Sequence: ACCCUGUAGAUCCGAAUUUGUGA
Description: mir-10 microRNA precursor family predicted,partially
Species: 忍冬  Species latin name: Lonicera japonica
TCM Name: Rendongteng(忍冬藤)   Jinyinhua(金银花)  
TCM Resource (Sample number): 金银花(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10af; bca-miR10e; cfe-miR10ae; cit-miR10ah; cmd-miR10af; esn-miR10e; hcr-miR10e; ljn-miR10d; poe-miR10af; ppr-miR10e; pvl-miR10e; sgi-miR10e; sor-miR10ag; tki-miR10e; zof-miR10c;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00036   21.5   0.0  cm        9       31 ~~           1          23 + ~~ 1.00 5'&3' 0.43
                                                             ???   ???????????????        NC
                                                       ~~~~~-<<<---<<<<<<<<<<<<<<<_~~~~~~ CS
                                             mir-10  1 <[8]*ACCCUGUAGAucCGAacuUGUGu*[44]> 75
                                                            ACCCUGUAGAUCCGAA UUGUG
                                         zof-miR10c  1 <[0]*ACCCUGUAGAUCCGAAUUUGUGA*[ 0]> 23
                                                       .....***********************...... PP

Targets

Predicted by TargetFinder

NM_001172689 ;   NM_001172690 ;   NM_001172691 ;   NM_001172692 ;  

Predicted by TAPIR

NM_001172689 ;   NM_001172690 ;   NM_001172691 ;   NM_001172692 ;