The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR167
  5. ljn-miR167

Accession: B42108644

Entry

ID: ljn-miR167
Alias: F4.L000173.A3D*
Sequence: UGAAGCUGCCAGCAUGAUCUA
Description: MIR167 putative
Species: 忍冬  Species latin name: Lonicera japonica
TCM Name: Rendongteng(忍冬藤)   Jinyinhua(金银花)  
TCM Resource (Sample number): 金银花(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR167a-5p; aly-miR167b-5p; aof-miR167a; ata-miR167a-5p; ata-miR167c-5p; ata-miR167e-5p; ath-miR167a-5p; ath-miR167b; bdi-miR167a; bdi-miR167b; bdi-miR167f; bna-miR167c; bra-miR167a; bra-miR167b; bra-miR167c; bra-miR167d; cme-miR167a; cme-miR167b; cpa-miR167a; cpa-miR167b; csi-miR167d-5p; csi-miR167e-5p; dpr-miR167a; dpr-miR167b; ghr-miR167a; ghr-miR167b; gma-miR167a; gma-miR167b; gma-miR167d; lus-miR167c; lus-miR167d; lus-miR167e; lus-miR167h; mdm-miR167b; mdm-miR167c; mdm-miR167d; mdm-miR167e; mdm-miR167f; mdm-miR167g; mes-miR167c; mtr-miR167a; nta-miR167d; nta-miR167e; osa-miR167a-5p; osa-miR167b; osa-miR167c-5p; ppe-miR167a; ppe-miR167b; ptc-miR167a; ptc-miR167b; ptc-miR167c; ptc-miR167d; rco-miR167a; rco-miR167b; sbi-miR167a; sbi-miR167b; sbi-miR167i; sly-miR167a; stu-miR167a-5p; stu-miR167b-5p; stu-miR167c-5p; stu-miR167d-5p; tae-miR167a; tcc-miR167a; tcc-miR167b; vvi-miR167b; vvi-miR167d; vvi-miR167e; zma-miR167a-5p; zma-miR167b-5p; zma-miR167c-5p; zma-miR167d-5p;

Bencao Homologs

Bjl-miR167a; aan-miR167a; apl-miR167b; ave-miR167a; cas-miR167a; cco-miR167b; cmd-miR167a; cmo-miR167; csp-miR167a; dst-miR167b; eja-miR167a; epr-miR167a; est-miR167a; gbi-miR167a; hcr-miR167a; iba-miR167a; lba-miR167a; ljn-miR167; lpu-miR167b; mca-miR167b; nnu-miR167a; pav-miR167a; pcl-miR167a; pfr-miR167a; poe-miR167b; por-miR167b; pvl-miR167b; sba-miR167a; sch-miR167a; sdi-miR167a; smi-miR167b; tci-miR167b; tmo-miR167a;

Rfam Alignments

>> MIR167_1  microRNA MIR167_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00018   23.3   0.0  cm       14       34 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                                ??? ?????  ??????????       NC
                                                          ~~~~~~<<<-<<<<<--<<<<<<<<<<~~~~~~ CS
                                              MIR167_1  1 <[13]*UGAAGCUGCCAGCAUGAuCUg*[96]> 130
                                                                UGAAGCUGCCAGCAUGAUCU
                                           tmo-miR167a  1 <[ 0]*UGAAGCUGCCAGCAUGAUCUA*[ 0]> 21
                                                          ......*********************...... PP

Targets

Predicted by TargetFinder

NM_000071 ;   NM_001159770 ;   NM_001166131 ;   NM_001178008 ;   NM_001178009 ;   NM_001307960 ;   NM_001308026 ;   NM_001320100 ;   NM_001320298 ;   NM_001321072 ;   NM_001321073 ;   NM_001330504 ;   NM_001352691 ;   NM_001352692 ;   NM_001352693 ;   NM_001354006 ;   NM_001354007 ;   NM_001354008 ;   NM_001354009 ;   NM_001354010 ;   NM_001354012 ;   NM_001354014 ;   NM_001354015 ;   NM_001370528 ;   NM_015078 ;   NM_019109 ;   NM_025141 ;   NM_078474 ;   NM_139177 ;   NM_152463 ;   NM_153000 ;   NM_172364 ;   NM_198859 ;   NR_024248 ;   NR_120673 ;   NR_135147 ;   NR_148682 ;  

Predicted by TAPIR

NM_001085401 ;   NM_001159770 ;   NM_001166131 ;   NM_001178009 ;   NM_001247996 ;   NM_001307960 ;   NM_001308026 ;   NM_001318392 ;   NM_001320100 ;   NM_001321072 ;   NM_001321073 ;   NM_001321981 ;   NM_001330332 ;   NM_001346743 ;   NM_001346744 ;   NM_001352691 ;   NM_001352692 ;   NM_001352693 ;   NM_001354006 ;   NM_001354007 ;   NM_001354008 ;   NM_001354009 ;   NM_001354010 ;   NM_001354012 ;   NM_001354014 ;   NM_001354015 ;   NM_001362924 ;   NM_001362925 ;   NM_001362926 ;   NM_001370528 ;   NM_001371910 ;   NM_001371911 ;   NM_006609 ;   NM_018482 ;   NM_020880 ;   NM_025141 ;   NM_032329 ;   NM_078474 ;   NM_139177 ;   NM_152463 ;   NM_153000 ;   NM_172364 ;   NM_175709 ;   NM_198859 ;   NR_104463 ;   NR_104464 ;   NR_120673 ;   NR_135147 ;   NR_148682 ;