The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. fmu-miR133a

Accession: B31342699

Entry

ID: fmu-miR133a
Alias: F1236.M000017.A25*
Sequence: UUGGUCCCCUUCAACCAGCUGC
Description: mir-133 microRNA precursor family predicted,partially
Species: 何首乌  Species latin name: Fallopia multiflora
TCM Name: Heshouwu(何首乌)   Zhiheshouwu(制何首乌)   Shouwuteng(首乌藤)  
TCM Resource (Sample number): 何首乌(1) 首乌藤(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

acr-miR133a; asc-miR133c; bca-miR133b; bpi-miR133aj; cci-miR133b; cfe-miR133d; cit-miR133aj; cmd-miR133ag; cof-miR133b; csp-miR133a; csu-miR133b; epr-miR133a; esn-miR133a; fmu-miR133a; gel-miR133a; hcr-miR133am; lcr-miR133a; ljp-miR133b; poe-miR133af; sch-miR133c; sdf-miR133a; sln-miR133a; sor-miR133al; tch-miR133ae; zof-miR133e;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00012   23.1   0.0  cm       52       73 ~~           1          22 + ~~ 1.00 5'&3' 0.59
                                                              ?????     ?? ???????         NC
                                                        ~~~~~~>>>>>----->>->>>>>>>--~~~~~~ CS
                                             mir-133  1 <[51]*uUGGUCCCCUUCAACCAGCuGU*[14]> 87
                                                              UUGGUCCCCUUCAACCAGCUG+
                                         zof-miR133e  1 <[ 0]*UUGGUCCCCUUCAACCAGCUGC*[ 0]> 22
                                                        ......**********************...... PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001364885 ;   NM_015946 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;   NR_038883 ;   NR_134559 ;  

Predicted by TAPIR

NM_000201 ;   NM_000533 ;   NM_001106 ;   NM_001128834 ;   NM_001145153 ;   NM_001305004 ;   NM_001364885 ;   NM_015946 ;   NM_022744 ;   NM_024791 ;   NM_025081 ;   NM_144649 ;   NM_199478 ;   NR_038883 ;   NR_134559 ;