The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. asc-miR10j

Accession: B08410216

Entry

ID: asc-miR10j
Alias: F29943.M000284.A25
Sequence: AACCCGUAGAUCCGAUCUUGUG
Description: mir-10 microRNA precursor family predicted,partially
Species: 猪毛蒿  Species latin name: Artemisia scoparia
TCM Name: Yinchen(茵陈)  
TCM Resource (Sample number): 茵陈(2)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10as; Bswzz-miR10f; acr-miR10f; asc-miR10j; bca-miR10p; bch-miR10j; bhi-miR10g; bpi-miR10g; cas-miR10f; cci-miR10j; cfe-miR10aq; cit-miR10bg; cmd-miR10ar; cmo-miR10c; cof-miR10i; cso-miR10a; csp-miR10k; csu-miR10g; ehu-miR10e; eja-miR10d; epr-miR10e; esn-miR10l; fmu-miR10j; fsu-miR10l; gel-miR10k; hcr-miR10q; lba-miR10e; ljn-miR10h; ljo-miR10g; ljp-miR10h; lln-miR10b; llu-miR10h; mal-miR10e; nnu-miR10d; pfr-miR10g; poe-miR10ba; ppr-miR10o; psu-miR10e; pvl-miR10n; run-miR10e; sar-miR10f; sba-miR10b; sdf-miR10j; sgi-miR10o; sln-miR10d; sor-miR10bc; tch-miR10h; tfa-miR10e; tki-miR10s; tmo-miR10i; vph-miR10h; zof-miR10l;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   19.6   0.0  cm        8       30 ~~           1          22 + ~~ 1.00 5'&3' 0.50
                                                               ???   ???????????????       NC
                                                        ~~~~~--<<<---<<<<<<<<<<<<<<<~~~~~~ CS
                                              mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGUG*[45]> 75
                                                             +ACCC GUAGAUCCGA CUUGUG
                                          zof-miR10l  1 <[0]*AACCC-GUAGAUCCGAUCUUGUG*[ 0]> 22
                                                        .....*****.*****************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR