The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. csp-miR122b

Accession: B25296589

Entry

ID: csp-miR122b
Alias: F1789.N000004.A11
Sequence: AGGAGUGUGACAAUGGUGUUUGU
Description: mir-122 microRNA precursor predicted,partially
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122b; Bswzz-miR122b; car-miR122b; cba-miR122b; cfe-miR122b; cmd-miR122b; cof-miR122b; csp-miR122b; fmu-miR122b; ljc-miR122b; ppr-miR122b;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0071   18.6   0.0  cm       10       31 .~           2          23 + .~ 1.00    3' 0.45
                           ??????? ???????????        NC
                         --<<<<<<<-<<<<<<<<<<<_~~~~~~ CS
              mir-122 10 GGAGUGUGACaAUGGuGUUUGU*[32]> 63
                         GGAGUGUGACAAUGGUGUUUGU
          ppr-miR122b  2 GGAGUGUGACAAUGGUGUUUGU*[ 0]> 23
                         **********************...... PP

Targets

Predicted by TargetFinder

NM_001112808 ;   NM_001199327 ;   NM_015978 ;   NR_024183 ;   NR_024594 ;   NR_039899 ;  

Predicted by TAPIR

NM_001112808 ;   NM_001199327 ;   NM_015978 ;   NR_024183 ;   NR_024368 ;   NR_024594 ;   NR_039899 ;