Entry

ID: cmd-miR122b
Alias: F1789.N000004.A11
Sequence: AGGAGUGUGACAAUGGUGUUUGU
Description: mir-122 microRNA precursor predicted,partially
Species: 香橼 Species latin name: Citrus medica
TCM Name: Foshou(佛手) Zhiqiao(枳壳) Zhishi(枳实) Xiangyuan(香橼)
TCM Resource (Sample number): 佛手(1) 枳壳(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122b; Bswzz-miR122b; car-miR122b; cba-miR122b; cfe-miR122b; cmd-miR122b; cof-miR122b; csp-miR122b; fmu-miR122b; ljc-miR122b; ppr-miR122b;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0071   18.6   0.0  cm       10       31 .~           2          23 + .~ 1.00    3' 0.45
                           ??????? ???????????        NC
                         --<<<<<<<-<<<<<<<<<<<_~~~~~~ CS
              mir-122 10 GGAGUGUGACaAUGGuGUUUGU*[32]> 63
                         GGAGUGUGACAAUGGUGUUUGU
          ppr-miR122b  2 GGAGUGUGACAAUGGUGUUUGU*[ 0]> 23
                         **********************...... PP

Targets

Predicted by TargetFinder

NM_001112808 ; NM_001199327 ; NM_015978 ; NR_024183 ; NR_024594 ; NR_039899 ;

Predicted by TAPIR

NM_001112808 ; NM_001199327 ; NM_015978 ; NR_024183 ; NR_024368 ; NR_024594 ; NR_039899 ;

The Bencao (Herbal) Database（本草数据库）

Accession: B18662270