The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F10042
  5. B52841271

Accession: B52841271

Entry

ID: -
Alias: F10042.O000426.A25
Sequence: CGGGAAGGACGCACCUCUGGUGUA
Description: IRES_n-myc n-myc internal ribosome entry site (IRES)
Species: 紫苏  Species latin name: Perilla frutescens
TCM Names: Zisuzi(紫苏子) Zisuye(紫苏叶) Zisugeng(紫苏梗)
TCM Resource (Sample number): 紫苏子(1) 紫苏叶(1) 紫苏梗(1) 紫苏(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00150059; B00416956; B00945689; B01856491; B03586187; B05016315; B05429896; B05668018; B06065976; B07490658; B07889624; B08117407; B08380991; B08774795; B09197002; B09477878; B09838827; B10366296; B11207755; B11750335; B12217813; B12539391; B12976427; B13240395; B13410308; B13971101; B14342259; B15063371; B15870193; B16113528; B16363492; B16588488; B17153776; B17581522; B18003459; B19000397; B19981155; B20305750; B20709003; B21093220; B22691018; B23473583; B24659995; B25435056; B25967538; B26229803; B27081987; B27430180; B28284550; B28690961; B28890182; B29750887; B30232532; B30965949; B31580075; B32789440; B33234245; B33762454; B33899413; B34819243; B35092722; B35540594; B35856748; B36193883; B36909643; B37353258; B38037088; B38238544; B38880433; B39283258; B39881869; B40352687; B41004704; B41980367; B42323239; B42904600; B43205975; B43666589; B44404151; B45136391; B45572020; B45910436; B46965306; B47499440; B48068399; B48838062; B49363574; B50234547; B50643971; B51053275; B51339747; B51600038; B51900463; B52172356; B52841271; B53360981; B53594426; B53782200; B54135056; B54600535; B55393927; B55606075; B56807144; B57291154; B58535749; B58990149; B59548116; B60252483; B60588466; B61031779; B61581950; B62777347; B63082574; B63800012; B64229190; B66026721; B66474346; B66758047; B67110070; B68736545; B68902444; B69496413; B69791872; B70073765; B71627797; B73146506; B73623369;

Rfam Alignments

>> IRES_n-myc  n-myc internal ribosome entry site (IRES)
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.097    7.6   0.0  cm      220      240 ~.           1          21 + ~. 1.00    5' 0.67
                                                              ??                   NC
                                                        ~~~~~_>>,,,,,,,,,<<<___>>> CS
                                         IRES_n-myc 215 <[5]*cGGgAAGGAAGCACCCCCGGU 240
                                                             CGGGAAGGA GCACC C GGU
                                 F10042.O000426.A25   1 <[0]*CGGGAAGGACGCACCUCUGGU 21
                                                        .....********************* PP

Targets

Predicted by TargetFinder


Predicted by TAPIR