The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F95
  5. B50399568

Accession: B50399568

Entry

ID: -
Alias: F95.I000006.A25
Sequence: AACUUUCAACAACGGAUC
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 萹蓄  Species latin name: Polygonum aviculare
TCM Names: Bianxu(萹蓄)  
TCM Resource (Sample number): 萹蓄(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00015259; B01031397; B01316329; B01591216; B02213849; B02873447; B03309576; B03674697; B04105616; B04454951; B04763540; B05111621; B05507456; B05757042; B06769321; B07256477; B07586112; B07981002; B08834192; B09591894; B09973971; B10457837; B10824340; B11515825; B11805544; B12092652; B12303164; B12649817; B13075907; B13313295; B13463467; B13783429; B14045961; B14445619; B14718526; B15187357; B15354167; B15754739; B15900997; B16209264; B16402540; B16739410; B17300181; B17671394; B19825883; B20054893; B20394315; B20819465; B21196209; B21995057; B22726683; B23567221; B24454401; B24761157; B25048194; B25735074; B26024401; B26505953; B26884989; B27136318; B27525774; B27725965; B28033266; B28415792; B28766397; B28928188; B29485602; B30360905; B31038172; B31848987; B32665195; B32877190; B33586294; B33946754; B34398691; B34604312; B34920587; B35610558; B35999748; B36239297; B36507491; B37002978; B37488380; B37848670; B38076574; B38472653; B38672530; B38957027; B39426034; B40072732; B40458056; B40850303; B41084904; B41558215; B42141221; B42366942; B42654463; B43383696; B44485978; B45327349; B45670101; B45953252; B46543385; B47042338; B47551184; B47908944; B48185393; B49113276; B49426319; B49668350; B49873255; B50399568; B50706290; B51156380; B51683820; B51965935; B52284397; B53048839; B53820796; B54311054; B54674006; B54916577; B55451793; B55659508; B56165368; B56869234; B57340715; B57818600; B58290284; B58647337; B59244540; B59678050; B60047366; B60329690; B61248216; B62403355; B62623256; B62819661; B63936045; B64334235; B65278357; B65756395; B66285966; B67214977; B68557763; B68951354; B69247606; B69556419; B69885293; B70312732; B70483902; B71143546; B71778698; B72294618; B72878001; B73349847;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.081   10.1   0.0  cm        1       18 [~           1          18 + [~ 1.00    3' 0.39
                                                                                     NC
                                                           ::::::::::::::::::~~~~~~~ CS
                                              5_8S_rRNA  1 AACuuUuAgCGAUGGAUg*[136]> 154
                                                           AACUUU+A+C+A GGAU
                                        F95.I000006.A25  1 AACUUUCAACAACGGAUC*[  0]> 18
                                                           ******************....... PP

Targets

Predicted by TargetFinder

NM_000959 ;   NM_001009921 ;   NM_001039585 ;   NM_001136136 ;   NM_001145720 ;   NM_001167674 ;   NM_001167675 ;   NM_001253866 ;   NM_001256502 ;   NM_001256504 ;   NM_001256505 ;   NM_001257998 ;   NM_001271602 ;   NM_001286639 ;   NM_001286640 ;   NM_001303136 ;   NM_001303451 ;   NM_001306093 ;   NM_001308165 ;   NM_001320153 ;   NM_001320155 ;   NM_001330769 ;   NM_001330774 ;   NM_001349292 ;   NM_001349293 ;   NM_001349294 ;   NM_001349295 ;   NM_001349296 ;   NM_001349297 ;   NM_001349298 ;   NM_001349329 ;   NM_001349330 ;   NM_001349331 ;   NM_001349332 ;   NM_001350497 ;   NM_001350498 ;   NM_001350499 ;   NM_001350500 ;   NM_001351967 ;   NM_001351968 ;   NM_001351970 ;   NM_001351973 ;   NM_001365642 ;   NM_001365643 ;   NM_003255 ;   NM_003489 ;   NM_007017 ;   NM_014263 ;   NM_014606 ;   NM_014940 ;   NM_015303 ;   NM_015429 ;   NM_016120 ;   NM_017667 ;   NM_020188 ;   NM_024731 ;   NM_030661 ;   NM_030937 ;   NM_033123 ;   NM_139312 ;   NM_148894 ;   NM_152753 ;   NM_153184 ;   NM_153631 ;   NM_175907 ;   NM_178424 ;   NM_183353 ;   NR_134680 ;   NR_135154 ;   NR_146722 ;   NR_146723 ;   NR_147838 ;   NR_147839 ;   NR_147840 ;   NR_147841 ;   NR_147842 ;   NR_147843 ;  

Predicted by TAPIR