The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F27
  5. B42625222

Accession: B42625222

Entry

ID: -
Alias: F27.I000014.A25
Sequence: CGAUGAAGAACGUAGCGA
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 石松  Species latin name: Lycopodium japonicum
TCM Names: Shenjincao(伸筋草)  
TCM Resource (Sample number): 伸筋草(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00001828; B00187850; B00460207; B00660430; B01011924; B01550236; B03277423; B03663543; B03873641; B04439033; B04741903; B05074169; B05499280; B05724534; B06339483; B07550366; B07952341; B08457054; B08566015; B09259330; B09553884; B09955267; B10811413; B11488855; B11795053; B13056909; B13306831; B13447728; B13757794; B14034187; B14421043; B14688791; B15172677; B15727663; B15881209; B16386046; B17652353; B20031542; B20372640; B20779463; B21165690; B21971444; B22470458; B23127327; B23528777; B24412798; B24736846; B25023580; B26868158; B27487677; B27695201; B28748991; B28920128; B29814141; B30331355; B31002637; B31830540; B32242638; B32647381; B32832422; B33569550; B33795133; B33924342; B34370585; B34589287; B34888632; B35118245; B35595149; B35972477; B36230779; B36453447; B36993220; B38289269; B38455678; B38662465; B38945893; B39400521; B40039069; B40434411; B41069712; B41533846; B42112195; B42625222; B42965419; B43235822; B43358587; B43812021; B43970642; B44168642; B44455946; B45296399; B45634290; B45945318; B46531580; B47246083; B47543154; B47881573; B48111911; B49067441; B49404145; B49660342; B49853417; B50372292; B50689240; B51137057; B51403241; B51658882; B51938064; B52221827; B53000830; B53437603; B53619195; B53806998; B54270809; B54669237; B54899173; B55204973; B55423126; B55641429; B56143091; B56543294; B56854337; B57068501; B57318656; B58268903; B58625471; B59215764; B59643457; B59963709; B60023730; B60315105; B60771142; B61229064; B61672049; B62389796; B62600431; B62799764; B63508469; B63918652; B64310120; B64768716; B65253231; B65530665; B65725967; B66252249; B67181605; B68538003; B68785660; B68928983; B69212673; B69532751; B69868204; B70123926; B70390050; B71753931; B72278721; B72856919; B73331046;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.066   10.4   0.0  cm       34       51 ~~           1          18 + ~~ 1.00 5'&3' 0.50
                                                            ????????            NC
                                                ~~~~~~::::::((((<<<<____~~~~~~~ CS
                                   5_8S_rRNA  1 <[33]*CGAUGAAgaaCGCaGCaA*[103]> 154
                                                      CGAUGAAGAACG AGC+A
                             F27.I000014.A25  1 <[ 0]*CGAUGAAGAACGUAGCGA*[  0]> 18
                                                ......******************....... PP

Targets

Predicted by TargetFinder

NM_000765 ;   NM_001005168 ;   NM_001011547 ;   NM_001040703 ;   NM_001067 ;   NM_001135181 ;   NM_001168499 ;   NM_001242631 ;   NM_001256497 ;   NM_001256910 ;   NM_001280539 ;   NM_001282448 ;   NM_001300741 ;   NM_001318786 ;   NM_001318788 ;   NM_001318794 ;   NM_001318797 ;   NM_001318802 ;   NM_001321938 ;   NM_001321945 ;   NM_001321946 ;   NM_001321947 ;   NM_001321948 ;   NM_001346143 ;   NM_001346144 ;   NM_001346146 ;   NM_001353837 ;   NM_001353838 ;   NM_001367482 ;   NM_001370248 ;   NM_001370249 ;   NM_001370250 ;   NM_001370254 ;   NM_001372 ;   NM_001861 ;   NM_004662 ;   NM_004728 ;   NM_005161 ;   NM_012216 ;   NM_013231 ;   NM_015435 ;   NM_018235 ;   NM_021079 ;   NM_031438 ;   NM_052817 ;   NM_152250 ;   NM_183419 ;   NR_027991 ;  

Predicted by TAPIR