The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F27
  5. B48111912

Accession: B48111912

Entry

ID: -
Alias: F27.I000016.A25
Sequence: GAUGAAGAACGUAGCGAA
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 莲  Species latin name: Nelumbo nucifera
TCM Names: Lianzi(莲子) Lianzixin(莲子心) Lianfang(莲房) Liaxu(莲须) Heye(荷叶) Oujie(藕节)
TCM Resource (Sample number): 莲子心(1) 莲房(1) 莲须(1) 荷叶(1) 藕节(1) 莲(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00001830; B00460208; B00660431; B01011925; B01550237; B03663544; B03873642; B04439034; B05074170; B07550367; B07952342; B08566016; B09553885; B09955268; B10811414; B11488856; B11795054; B14421044; B14688792; B15172678; B15727664; B15881210; B16386048; B17652354; B18097481; B20031543; B20372641; B21165692; B21971445; B22470459; B23127328; B23528778; B24412799; B24736847; B25023581; B26006121; B27487678; B27695202; B29814142; B30331356; B31830541; B32647382; B32832423; B33569551; B33795134; B33924344; B34370586; B34589289; B34888633; B35118246; B35595150; B36453448; B36993221; B38289270; B38455679; B38945894; B40039070; B40434412; B42112196; B42625223; B42965420; B43358588; B43812022; B43970643; B44455947; B45296400; B45634291; B46531581; B47246084; B47543155; B47881574; B48111912; B49067442; B49404146; B49660343; B49853418; B50372293; B50689241; B51137058; B51658883; B51938065; B52221828; B53000831; B53437604; B53619196; B53806999; B54270810; B54899175; B55204974; B55641431; B56543295; B57318657; B58268904; B58625472; B59215765; B59643458; B59963710; B60771143; B61229065; B61672050; B62389797; B64310121; B64768717; B65253232; B65530666; B65725968; B66252250; B67181606; B68785661; B68928984; B69212674; B69532752; B69868205; B70123927; B70390051; B71131714; B71753932; B72278722; B72856920; B73331047;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.075   10.2   0.0  cm       35       52 ~~           1          18 + ~~ 1.00 5'&3' 0.44
                                                                       ????????             NC
                                                            ~~~~~~:::::((((<<<<_____~~~~~~~ CS
                                               5_8S_rRNA  1 <[34]*GAUGAAgaaCGCaGCaAA*[102]> 154
                                                                  GAUGAAGAACG AGC+AA
                                         F27.I000016.A25  1 <[ 0]*GAUGAAGAACGUAGCGAA*[  0]> 18
                                                            ......******************....... PP

Targets

Predicted by TargetFinder

NM_000297 ;   NM_000765 ;   NM_001039481 ;   NM_001040703 ;   NM_001130698 ;   NM_001168499 ;   NM_001178030 ;   NM_001178031 ;   NM_001199198 ;   NM_001206846 ;   NM_001243650 ;   NM_001256497 ;   NM_001256910 ;   NM_001278590 ;   NM_001280539 ;   NM_001300741 ;   NM_001308164 ;   NM_001346363 ;   NM_001346364 ;   NM_001346409 ;   NM_001346410 ;   NM_001347864 ;   NM_001353837 ;   NM_001353838 ;   NM_001363551 ;   NM_001363700 ;   NM_001365700 ;   NM_001365701 ;   NM_001366479 ;   NM_001367482 ;   NM_001370248 ;   NM_001370249 ;   NM_001370250 ;   NM_001370254 ;   NM_001372 ;   NM_001374355 ;   NM_001374356 ;   NM_001374357 ;   NM_001374358 ;   NM_001374359 ;   NM_001374360 ;   NM_001374361 ;   NM_002508 ;   NM_003305 ;   NM_003507 ;   NM_003718 ;   NM_004621 ;   NM_004630 ;   NM_004662 ;   NM_004728 ;   NM_006859 ;   NM_007236 ;   NM_012320 ;   NM_015435 ;   NM_015447 ;   NM_015562 ;   NM_018136 ;   NM_018235 ;   NM_018309 ;   NM_020858 ;   NM_021079 ;   NM_024966 ;   NM_024996 ;   NM_031438 ;   NM_144648 ;   NM_152250 ;   NM_153616 ;   NM_153617 ;   NM_153618 ;   NM_153619 ;   NM_183419 ;   NM_201435 ;   NM_201995 ;   NM_201997 ;   NM_201998 ;   NR_038444 ;   NR_038891 ;   NR_144301 ;   NR_144303 ;   NR_144305 ;   NR_144310 ;   NR_164499 ;   NR_164500 ;   NR_164501 ;   NR_164502 ;  

Predicted by TAPIR