The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F27
  5. B47881575

Accession: B47881575

Entry

ID: -
Alias: F27.I000018.A25
Sequence: UCGAUGAAGAACGUAGCA
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 甘松  Species latin name: Nardostachys jatamansi
TCM Names: Gansong(甘松)  
TCM Resource (Sample number): 甘松(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00001831; B00187852; B00460209; B00660432; B01011926; B01550239; B02017781; B03277424; B03873643; B04439035; B04741905; B05074171; B05499281; B05724536; B06111414; B06339484; B07550368; B07952343; B08154776; B08457055; B08566017; B08817109; B09259332; B09553887; B09955269; B10811415; B11488857; B11795055; B12288119; B12607764; B13447729; B14034188; B14421045; B14688793; B15172679; B15727665; B15881211; B16178617; B16386049; B16710919; B17271399; B17652355; B19815012; B20031544; B20372642; B20779465; B21165693; B21971446; B22470460; B22720843; B23127329; B23233498; B23528779; B24412801; B24736848; B25023582; B25724366; B26006122; B26868159; B27123414; B27487679; B27695203; B28028396; B28381007; B28748992; B28920129; B29463714; B29814143; B30331357; B30731649; B31002639; B31830542; B32242639; B32647383; B32832424; B33569552; B33795135; B33924345; B34370588; B34589290; B34888634; B35118247; B35595151; B35972478; B36453449; B36993222; B37480118; B37821901; B38064083; B38289272; B38455680; B38945895; B39400522; B40039071; B40434413; B41069713; B41533847; B42112197; B42625224; B42965421; B43235823; B43358589; B43812023; B43970644; B44168643; B44455948; B45296401; B45634292; B46531582; B47246085; B47543156; B47881575; B48111913; B49067444; B49404147; B49853419; B50372294; B50689242; B51137059; B51403242; B51658884; B51938066; B52221829; B53000832; B53437605; B53619197; B53807000; B54270811; B54669239; B55204975; B55641432; B56143093; B56543296; B56854339; B57068502; B57318658; B57805797; B58268905; B58625474; B59215766; B59643459; B59963711; B60023732; B60771144; B61174919; B61229066; B61672051; B61986345; B62389798; B62600434; B62799766; B63508470; B63918654; B64310123; B64768718; B65253233; B65530667; B65725969; B66252252; B66525081; B66818190; B67181607; B68538005; B68785662; B68928985; B69212675; B69868207; B70123928; B70302363; B70390052; B70460041; B71131715; B71753933; B72278723; B72856921; B73331048;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.054   10.7   0.0  cm       33       50 ~~           1          18 + ~~ 1.00 5'&3' 0.44
                                                                       ????????           NC
                                                          ~~~~~~:::::::((((<<<<___~~~~~~~ CS
                                             5_8S_rRNA  1 <[32]*UCGAUGAAgaaCGCaGCa*[104]> 154
                                                                UCGAUGAAGAACG AGCA
                                       F27.I000018.A25  1 <[ 0]*UCGAUGAAGAACGUAGCA*[  0]> 18
                                                          ......******************....... PP

Targets

Predicted by TargetFinder

NM_000555 ;   NM_001012339 ;   NM_001130699 ;   NM_001130700 ;   NM_001143948 ;   NM_001143957 ;   NM_001145853 ;   NM_001146221 ;   NM_001168499 ;   NM_001195553 ;   NM_001257268 ;   NM_001288805 ;   NM_001318786 ;   NM_001318788 ;   NM_001318794 ;   NM_001318797 ;   NM_001318802 ;   NM_001330167 ;   NM_001331185 ;   NM_001331186 ;   NM_001331187 ;   NM_001331189 ;   NM_001331190 ;   NM_001348420 ;   NM_001354682 ;   NM_001354684 ;   NM_001354685 ;   NM_001354686 ;   NM_001369370 ;   NM_001369371 ;   NM_001369372 ;   NM_001369373 ;   NM_001369374 ;   NM_001370248 ;   NM_001370249 ;   NM_001370250 ;   NM_001370254 ;   NM_001861 ;   NM_003749 ;   NM_005161 ;   NM_006005 ;   NM_006977 ;   NM_012311 ;   NM_014904 ;   NM_015553 ;   NM_018235 ;   NM_030784 ;   NM_032744 ;   NM_052845 ;   NM_133369 ;   NM_175062 ;   NM_178151 ;   NM_178152 ;   NM_178153 ;   NM_182523 ;   NM_194283 ;   NR_027434 ;   NR_027991 ;   NR_038118 ;   NR_045609 ;   NR_110556 ;   NR_110557 ;   NR_135065 ;   NR_136740 ;   NR_136741 ;   NR_136742 ;   NR_136743 ;   NR_136744 ;   NR_136746 ;   NR_138585 ;  

Predicted by TAPIR