The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F95
  5. B39426089

Accession: B39426089

Entry

ID: -
Alias: F95.J000884.A25
Sequence: AACUUUCAACAACGGAUCU
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 半边莲  Species latin name: Lobelia chinensis
TCM Names:
TCM Resource (Sample number): 半边莲(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00015273; B01031450; B01316384; B01591290; B02214006; B03309626; B03674732; B04105646; B04455004; B05111646; B05507530; B05757112; B06344180; B06769344; B07256489; B07586176; B08834223; B09591915; B09974063; B10457901; B11515871; B11805559; B12092686; B12303185; B12649867; B13313347; B13463574; B13783454; B14046069; B14445661; B14718557; B15187398; B15354226; B15901040; B16739477; B17300192; B17671428; B19825912; B20054935; B20394409; B20819480; B21995098; B22493480; B22726801; B25048251; B25735135; B26024448; B26505972; B26885002; B27136367; B27726011; B28033300; B28415819; B28766425; B28928228; B29485738; B30360975; B31038248; B31849306; B32665227; B32877227; B33586343; B33946836; B34398706; B34604397; B35610668; B35999789; B36239381; B36507514; B37002999; B37488462; B37848684; B38076605; B38472673; B38672584; B39426089; B40072796; B40458118; B40850341; B41085040; B41558316; B42141257; B42366980; B42654501; B42997920; B43383781; B44486074; B45327392; B45670121; B45953299; B46543419; B47042378; B47270556; B47551207; B47908964; B48185437; B49113284; B49426419; B49668426; B49873348; B50399610; B50706419; B51156431; B51683836; B51965953; B52284432; B53048866; B53820814; B54311091; B54916588; B55451804; B55659662; B56165394; B56869265; B57340791; B57818618; B58290310; B58647469; B59244613; B59678075; B60047390; B60329783; B61248312; B62403376; B62819719; B63524283; B63936110; B64334344; B65278370; B66285981; B66853780; B67215003; B68557788; B68951396; B69247653; B69556526; B69885356; B70312750; B70483944; B71143574; B71778738; B72294735; B73349946;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.048   11.0   0.0  cm        1       19 [~           1          19 + [~ 1.00    3' 0.37
                                                                                     NC
                                                          :::::::::::::::::::~~~~~~~ CS
                                             5_8S_rRNA  1 AACuuUuAgCGAUGGAUgu*[135]> 154
                                                          AACUUU+A+C+A GGAU U
                                       F95.J000884.A25  1 AACUUUCAACAACGGAUCU*[  0]> 19
                                                          *******************....... PP

Targets

Predicted by TargetFinder

NM_001009921 ;   NM_001286639 ;   NM_001286640 ;   NM_001303136 ;   NM_001308165 ;   NM_001320153 ;   NM_001320155 ;   NM_001349292 ;   NM_001349293 ;   NM_001349294 ;   NM_001349295 ;   NM_001349296 ;   NM_001349297 ;   NM_001349298 ;   NM_001349329 ;   NM_001349330 ;   NM_001349331 ;   NM_001349332 ;   NM_001350497 ;   NM_001350498 ;   NM_001350499 ;   NM_001350500 ;   NM_001365642 ;   NM_001365643 ;   NM_003255 ;   NM_007017 ;   NM_014940 ;   NM_015303 ;   NM_015429 ;   NM_030661 ;   NM_030937 ;   NM_152753 ;   NM_153631 ;   NM_178424 ;   NR_134680 ;   NR_135154 ;   NR_146722 ;   NR_146723 ;  

Predicted by TAPIR