The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F27
  5. B34589291

Accession: B34589291

Entry

ID: -
Alias: F27.I000019.A25
Sequence: UCGAUGAAGAACGUAGCG
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 绞股蓝  Species latin name: Gynostemma pentaphyllum
TCM Names:
TCM Resource (Sample number): 绞股蓝(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00001832; B00187853; B00460210; B00660433; B01011927; B01301030; B01550240; B02017782; B02196537; B02869142; B03277425; B03663545; B03873644; B04439036; B04741906; B05074172; B05499282; B05724537; B06111415; B06339485; B07235732; B07550369; B07952344; B08154777; B08457056; B08566018; B08817110; B09259333; B09553888; B09955270; B10447335; B10811416; B11488858; B11795056; B12288120; B12607765; B13056910; B13306832; B13447730; B13757795; B14034189; B14421046; B14688794; B15172680; B15337338; B15727666; B15881212; B16178618; B16386050; B16710920; B17271400; B17652356; B18097482; B20031545; B20372643; B20779466; B21165694; B21971447; B22470461; B22720844; B23127330; B23233499; B23528780; B24412802; B24736849; B25023583; B25724367; B26006123; B26841360; B26868160; B27123415; B27487680; B27695204; B28028397; B28381008; B28748993; B28920130; B29463715; B29814144; B30063706; B30331358; B31002640; B31830543; B32242640; B32647384; B32832425; B33569553; B33795136; B33924346; B34370589; B34589291; B34888635; B35118248; B35595152; B35972479; B36230780; B36453450; B36993223; B37480119; B37821902; B38289273; B38455681; B38945896; B39400523; B40039072; B40434414; B41069714; B41533848; B42112198; B42363852; B42625225; B42965422; B43235824; B43358590; B43812024; B43970645; B44168644; B44455949; B45296402; B45634293; B45945319; B46531583; B47036430; B47246086; B47543157; B47881576; B48111914; B49067445; B49404148; B49660345; B49853420; B50372295; B50689243; B51137060; B51403243; B51658885; B51938067; B52221830; B53000833; B53437606; B53619198; B53807001; B54270812; B54669240; B54899176; B55204976; B55423127; B55641433; B56143094; B56543297; B56854340; B57068503; B57318659; B57805798; B58268906; B58625475; B59215767; B59643460; B59963712; B60023733; B60315106; B60771145; B61174920; B61229067; B61672052; B61986346; B62389799; B62600435; B62799767; B63508471; B63918655; B64310124; B64768719; B64976882; B65253234; B65530668; B65725970; B66252253; B66525082; B66818191; B67181608; B68538006; B68785663; B68928986; B69212676; B69532753; B69868208; B70123929; B70302364; B70390053; B70460042; B71131716; B71753934; B72278724; B72856922; B73331049;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.074   10.3   0.0  cm       33       50 ~~           1          18 + ~~ 1.00 5'&3' 0.50
                                                                         ????????           NC
                                                            ~~~~~~:::::::((((<<<<___~~~~~~~ CS
                                               5_8S_rRNA  1 <[32]*UCGAUGAAgaaCGCaGCa*[104]> 154
                                                                  UCGAUGAAGAACG AGC+
                                         F27.I000019.A25  1 <[ 0]*UCGAUGAAGAACGUAGCG*[  0]> 18
                                                            ......******************....... PP

Targets

Predicted by TargetFinder

NM_000555 ;   NM_001011547 ;   NM_001135181 ;   NM_001135659 ;   NM_001143948 ;   NM_001145853 ;   NM_001168499 ;   NM_001195553 ;   NM_001280539 ;   NM_001288805 ;   NM_001308164 ;   NM_001318786 ;   NM_001318788 ;   NM_001318794 ;   NM_001318797 ;   NM_001318802 ;   NM_001321938 ;   NM_001321945 ;   NM_001321946 ;   NM_001321947 ;   NM_001321948 ;   NM_001330077 ;   NM_001330078 ;   NM_001330079 ;   NM_001330081 ;   NM_001330082 ;   NM_001330083 ;   NM_001330084 ;   NM_001330085 ;   NM_001330086 ;   NM_001330087 ;   NM_001330088 ;   NM_001330089 ;   NM_001330090 ;   NM_001330093 ;   NM_001330094 ;   NM_001330095 ;   NM_001330096 ;   NM_001331185 ;   NM_001331186 ;   NM_001331187 ;   NM_001331189 ;   NM_001331190 ;   NM_001353837 ;   NM_001353838 ;   NM_001369370 ;   NM_001369371 ;   NM_001369372 ;   NM_001369373 ;   NM_001369374 ;   NM_001370248 ;   NM_001370249 ;   NM_001370250 ;   NM_001370254 ;   NM_001374355 ;   NM_001374356 ;   NM_001374357 ;   NM_001374358 ;   NM_001374359 ;   NM_001374360 ;   NM_001374361 ;   NM_001567 ;   NM_001861 ;   NM_003749 ;   NM_004801 ;   NM_005161 ;   NM_006005 ;   NM_012311 ;   NM_015435 ;   NM_018235 ;   NM_020745 ;   NM_024996 ;   NM_032744 ;   NM_052845 ;   NM_152311 ;   NM_152457 ;   NM_178151 ;   NM_178152 ;   NM_178153 ;   NM_182523 ;   NM_183419 ;   NR_027991 ;   NR_038118 ;   NR_045609 ;   NR_110102 ;   NR_135065 ;   NR_138585 ;   NR_164499 ;   NR_164500 ;   NR_164501 ;   NR_164502 ;  

Predicted by TAPIR