The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F95
  5. B04455001

Accession: B04455001

Entry

ID: -
Alias: F95.J000876.A25
Sequence: AAACUUUCAACAACGGAUC
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 石菖蒲  Species latin name: Acorus gramineus
TCM Names:
TCM Resource (Sample number): 石菖蒲(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00015272; B00217873; B00693955; B01031448; B01316379; B01591287; B02213999; B02873459; B03309625; B03674728; B03898648; B04105643; B04455001; B04763554; B05111645; B05507526; B05757107; B06344179; B06579711; B06769342; B07256487; B07586172; B07981023; B08179888; B08834222; B09279188; B09591914; B09974062; B10457897; B10824347; B11515869; B11805558; B12092684; B12303184; B12649863; B13075955; B13313346; B13463570; B13783449; B14046064; B14445654; B14718554; B15187395; B15354224; B15754746; B15901038; B16209273; B16402574; B16739472; B17300191; B17671425; B18131419; B19825910; B20054934; B20394407; B20819479; B21196354; B21995096; B22493478; B22726794; B23567244; B24454403; B24761174; B25048245; B25735133; B26024446; B26505971; B26845284; B27136364; B27525801; B27726008; B28033298; B28415815; B28766423; B28928224; B29485730; B29844122; B30360971; B31038245; B31849301; B32256980; B32665226; B32877223; B33586342; B33946833; B34398705; B34604391; B34920595; B35163402; B35610663; B35999786; B36239378; B36507511; B37002998; B37488454; B37848682; B38076602; B38313882; B38472669; B38672578; B38957034; B39426085; B40072792; B40458116; B40850337; B41085034; B41558312; B42141254; B42366978; B42654500; B42997919; B43253961; B43383775; B44486068; B45327389; B45670119; B45953295; B46543417; B47042374; B47270555; B47551206; B47908963; B48185433; B49113282; B49426412; B49668424; B49873344; B50399607; B50706414; B51156429; B51418782; B51683834; B51965952; B52284429; B53048865; B53820813; B54311087; B54674019; B54916587; B55235338; B55451803; B55659657; B56165393; B56574709; B56869263; B57101468; B57340788; B57818617; B58290309; B58647465; B59244609; B59678073; B59971252; B60047387; B60329777; B60790991; B61179572; B61248306; B61698996; B62005979; B62403375; B62623283; B62819717; B63524282; B63936107; B64334340; B64979497; B65278369; B65756446; B66285980; B66853779; B67215002; B68557787; B68951393; B69247650; B69556523; B69885352; B70312749; B70400601; B70483940; B71143571; B71778736; B72294729; B72878025; B73349942;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.085   10.1   0.0  cm        1       18 [~           2          19 + .~ 1.00    3' 0.39
                                                                                    NC
                                                          ::::::::::::::::::~~~~~~~ CS
                                             5_8S_rRNA  1 AACuuUuAgCGAUGGAUg*[136]> 154
                                                          AACUUU+A+C+A GGAU
                                       F95.J000876.A25  2 AACUUUCAACAACGGAUC*[  0]> 19
                                                          ******************....... PP

Targets

Predicted by TargetFinder

NM_001009921 ;   NM_001076786 ;   NM_001080415 ;   NM_001105573 ;   NM_001130158 ;   NM_001161819 ;   NM_001253866 ;   NM_001257998 ;   NM_001265588 ;   NM_001303136 ;   NM_001306093 ;   NM_001308165 ;   NM_001320219 ;   NM_001320220 ;   NM_001320222 ;   NM_001330237 ;   NM_001330238 ;   NM_001349292 ;   NM_001349293 ;   NM_001349294 ;   NM_001349295 ;   NM_001349296 ;   NM_001349297 ;   NM_001349298 ;   NM_003414 ;   NM_003489 ;   NM_007017 ;   NM_007043 ;   NM_012223 ;   NM_014263 ;   NM_015303 ;   NM_017667 ;   NM_139312 ;   NM_152753 ;   NM_175907 ;   NM_178424 ;   NM_198570 ;   NR_049749 ;   NR_134680 ;  

Predicted by TAPIR