The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. zof-miR10b

Accession: B70919788

Entry

ID: zof-miR10b
Alias: F6245.L000021.A25*
Sequence: AACCCGUAGAUCCGAUCUUGU
Description: mir-10 microRNA precursor family predicted,partially
Species: 姜  Species latin name: Zingiber officinale
TCM Name: Ganjiang(干姜)   Paojiang(炮姜)   Shengjiang(生姜)  
TCM Resource (Sample number): 干姜(1) 炮姜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10ac; Bswzz-miR10b; acr-miR10b; agr-miR10a; asc-miR10b; bca-miR10c; bch-miR10c; bci-miR10a; bhi-miR10b; bpi-miR10b; cas-miR10b; cba-miR10c; cci-miR10b; cfe-miR10ac; cit-miR10ac; cma-miR10a; cmd-miR10ac; cmo-miR10a; cof-miR10a; cri-miR10b; csp-miR10c; csu-miR10b; cya-miR10a; ehu-miR10a; eja-miR10a; epr-miR10a; esn-miR10c; fmu-miR10b; fsu-miR10b; gel-miR10c; hcr-miR10c; kga-miR10b; lba-miR10b; lch-miR10a; lgr-miR10a; ljc-miR10b; lji-miR10a; ljo-miR10a; ljp-miR10b; llu-miR10b; mal-miR10a; nnu-miR10a; nte-miR10a; pav-miR10a; pfr-miR10b; poe-miR10ac; ppr-miR10c; psu-miR10b; pvl-miR10c; run-miR10b; sad-miR10b; sar-miR10a; sca-miR10; sch-miR10b; sdf-miR10b; sdi-miR10a; sgi-miR10c; sln-miR10a; sor-miR10ac; ssa-miR10a; ssu-miR10a; tch-miR10a; tfa-miR10b; tki-miR10c; vph-miR10c; xst-miR10; zof-miR10b;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0039   18.2   0.0  cm        8       29 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                             ???   ??????????????       NC
                                                      ~~~~~--<<<---<<<<<<<<<<<<<<~~~~~~ CS
                                            mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGU*[46]> 75
                                                           +ACCC GUAGAUCCGA CUUGU
                                        zof-miR10b  1 <[0]*AACCC-GUAGAUCCGAUCUUGU*[ 0]> 21
                                                      .....*****.****************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR