The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR171
  5. twi-miR171

Accession: B68969646

Entry

ID: twi-miR171
Alias: F128.L001327.A3D*
Sequence: UUGAGCCGCGUCAAUAUCUCC
Description: MIR171 putative
Species: 雷公藤  Species latin name: Tripterygium wilfordii
TCM Name:
TCM Resource (Sample number): 雷公藤(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

aof-miR171c; csi-miR171e-3p; csi-miR171g-3p; ctr-miR171; fve-miR171h; mdm-miR171a; mdm-miR171b; mdm-miR171p; mes-miR171a; ppe-miR171h;

Bencao Homologs

apl-miR171b; gpe-miR171; hcr-miR171b; hof-miR171; lfo-miR171b; nnu-miR171b; por-miR171b; rch-miR171b; sgl-miR171; twi-miR171;

Rfam Alignments

>> MIR171_1  microRNA MIR171_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.099   16.2   0.0  cm       72       91 ~.           1          20 + ~. 1.00    5' 0.50
                                                              ??????  ?????????   NC
                                                       ~~~~~~->>>>>>-->>>>>>>>>-- CS
                                           MIR171_1 11 <[61]*UUGAGCCGUgCCAAuAUCuC 91
                                                             UUGAGCCG G CAAUAUCUC
                                         twi-miR171  1 <[ 0]*UUGAGCCGCGUCAAUAUCUC 20
                                                       ......******************** PP

Targets

Predicted by TargetFinder

NM_001347667 ;  

Predicted by TAPIR

NM_001347667 ;