The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR164
  5. twi-miR164b

Accession: B69199082

Entry

ID: twi-miR164b
Alias: F49230.L000007.A25
Sequence: CAUGUGCCCGUCUUCCCCAUC
Description: microRNA MIR164 predicted
Species: 雷公藤  Species latin name: Tripterygium wilfordii
TCM Name:
TCM Resource (Sample number): 雷公藤(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

bhi-miR164; csu-miR164b; lfo-miR164c; twi-miR164b;

Rfam Alignments

>> MIR164  microRNA MIR164
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0075   16.2   0.0  cm       81      101 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                                                                  ?????????  ???????? ?      NC
                                                            ~~~~~~>>>>>>>>>-->>>>>>>>->~~~~~ CS
                                                 MIR164   1 <[80]*CAcGUGCcCuuCUUCuCCAuC*[8]> 109
                                                                  CA GUGCCC UCUUC CCAUC
                                            twi-miR164b   1 <[ 0]*CAUGUGCCCGUCUUCCCCAUC*[0]> 21
                                                            ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000068 ;   NM_001104595 ;   NM_001127221 ;   NM_001127222 ;   NM_001174080 ;   NM_001349913 ;   NM_001349914 ;   NM_001349915 ;   NM_001349916 ;   NM_017911 ;   NM_023035 ;   NR_146323 ;   NR_146617 ;  

Predicted by TAPIR

NM_001104595 ;   NM_001130706 ;   NM_001130708 ;   NM_001282968 ;   NM_001282969 ;   NM_001282970 ;   NM_001349913 ;   NM_001349914 ;   NM_001349915 ;   NM_001349916 ;   NM_001363979 ;   NM_017911 ;   NM_021944 ;   NR_146323 ;   NR_146617 ;