The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. tja-miR166e

Accession: B66979811

Entry

ID: tja-miR166e
Alias: F536.L000169.A3D*
Sequence: UCUCGGACCAGGCUUCAUUCC
Description: MIR166 putative
Species: 络石  Species latin name: Trachelospermum jasminoides
TCM Name: Luoshiteng(络石藤)  
TCM Resource (Sample number): 络石藤(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aof-miR166a; atr-miR166b; bdi-miR166f; csi-miR166b-3p; csi-miR166d-3p; csi-miR166g-3p; gma-miR166h-3p; gma-miR166k; pab-miR166e;

Bencao Homologs

Bbj-miR166c; Bjl-miR166k; Bswzz-miR166d; ade-miR166f; aha-miR166k; aox-miR166i; apa-miR166h; ave-miR166k; bca-miR166h; bpi-miR166f; car-miR166p; cas-miR166i; cco-miR166at; ccs-miR166ar; cit-miR166m; cmd-miR166k; cmj-miR166i; cor-miR166b; cri-miR166d; csp-miR166k; csu-miR166o; dst-miR166p; ehu-miR166k; epr-miR166au; est-miR166n; fmu-miR166l; fsu-miR166o; gbi-miR166au; gja-miR166n; gma-miR166m; gpe-miR166i; gsi-miR166k; gur-miR166; hcr-miR166ba; hof-miR166m; ini-miR166i; lcr-miR166h; ljc-miR166l; lji-miR166i; ljp-miR166k; llc-miR166n; lpu-miR166al; mal-miR166m; mca-miR166ar; mch-miR166m; pas-miR166a; pfr-miR166az; pgi-miR166c; pla-miR166b; por-miR166o; psu-miR166g; pvl-miR166az; rcd-miR166c; sad-miR166h; sar-miR166i; sba-miR166i; sbc-miR166n; sca-miR166d; sdf-miR166l; sgl-miR166g; smi-miR166m; sor-miR166m; ssu-miR166h; sto-miR166m; tch-miR166j; tja-miR166e; twi-miR166g; vof-miR166m; vph-miR166f;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00012   23.0   0.0  cm       99      119 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                                                                 ???  ??????  ??????      NC
                                                         ~~~~~~__>>>-->>>>>>-->>>>>>~~~~~ CS
                                             mir-166   1 <[98]*UCUCGGACCAGGCUUCAUUCC*[7]> 126
                                                               UCUCGGACCAGGCUUCAUUCC
                                         vph-miR166f   1 <[ 0]*UCUCGGACCAGGCUUCAUUCC*[0]> 21
                                                         ......*********************..... PP

Targets

Predicted by TargetFinder

NM_001171 ;   NM_001201576 ;   NM_001351800 ;   NM_001369407 ;   NM_001369420 ;   NM_001369421 ;   NM_001369422 ;   NM_018914 ;   NM_020360 ;   NM_032091 ;   NM_032092 ;   NM_133259 ;   NR_037719 ;   NR_047690 ;   NR_147784 ;  

Predicted by TAPIR

NM_001171 ;   NM_001201576 ;   NM_001278119 ;   NM_001278122 ;   NM_001351800 ;   NM_001369407 ;   NM_001369420 ;   NM_001369421 ;   NM_001369422 ;   NM_006298 ;   NM_018914 ;   NM_020360 ;   NM_032091 ;   NM_032092 ;   NM_133259 ;   NR_037719 ;   NR_147784 ;