The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. tch-miR1ab

Accession: B65865850

Entry

ID: tch-miR1ab
Alias: F574.L000025.A11
Sequence: UGGAAUGUAAAGAAGUAUGUG
Description: mir-1 microRNA precursor family predicted,partially
Species: 诃子  Species latin name: Terminalia chebula
TCM Name: Xiqingguo(西青果)   Hezi(诃子)  
TCM Resource (Sample number): 西青果(1) 诃子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR1b; acr-miR1b; cit-miR1ab; cmd-miR1ab; csu-miR1b; esn-miR1a; ljp-miR1a; poe-miR1ab; sdf-miR1a; sor-miR1ab; spo-miR1b; tch-miR1ab;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0045   20.4   0.0  cm       49       69 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                               ??? ?????????????????      NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGua*[8]> 77
                               UGGAAUGUAAAGAAGUAUGU
           tch-miR1ab  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUG*[0]> 21
                         ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000721 ;   NM_000892 ;   NM_001143957 ;   NM_001145373 ;   NM_001205293 ;   NM_001205294 ;   NM_001206838 ;   NM_001206839 ;   NM_001318394 ;   NM_001318396 ;   NM_001369395 ;   NM_001369396 ;   NM_002851 ;   NM_005562 ;   NM_030784 ;   NR_038244 ;   NR_038245 ;   NR_038246 ;   NR_103535 ;  

Predicted by TAPIR

NM_001166018 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NR_110084 ;