The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. rcr-miR319i

Accession: B56939938

Entry

ID: rcr-miR319i
Alias: F664.L000010.A3D
Sequence: UUGGACUGAAGGGUGCUCCCU
Description: MIR319 putative
Species: 大花红景天  Species latin name: Rhodiola crenulata
TCM Name: Hongjingtian(红景天)  
TCM Resource (Sample number): 红景天(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

bdi-miR319b-3p;

Bencao Homologs

Bswzz-miR319b; cmd-miR319d; fsu-miR319c; hcr-miR319g; ljn-miR319d; pvl-miR319f; rcr-miR319i; sor-miR319;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?      0.08   12.5   0.0  cm      165      185 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                                                                    ???????  ????????          NC
                                                            ~~~~~~~->>>>>>>-->>>>>>>>:::~~~~~~ CS
                                                 MIR159   1 <[164]*UUGGAcuGAAGGGAGCUCCuu*[11]> 196
                                                                   UUGGACUGAAGGG GCUCC+U
                                             sor-miR319   1 <[  0]*UUGGACUGAAGGGUGCUCCCU*[ 0]> 21
                                                            .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001258017 ;   NM_001258018 ;   NM_003076 ;   NM_015603 ;   NM_022781 ;   NM_139071 ;   NM_152899 ;   NM_172374 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_029401 ;   NR_033908 ;   NR_047577 ;   NR_132119 ;   NR_135112 ;  

Predicted by TAPIR

NM_001024215 ;   NM_001258017 ;   NM_001258018 ;   NM_001350151 ;   NM_003076 ;   NM_017556 ;   NM_022781 ;   NM_139071 ;   NM_152899 ;   NM_172374 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_029401 ;   NR_033908 ;   NR_047577 ;   NR_132119 ;   NR_135112 ;