The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. rcr-miR159bn

Accession: B57049328

Entry

ID: rcr-miR159bn
Alias: F140067.M000080.A11*
Sequence: UUUGGAUUGAAGGGAGCUCUAC
Description: microRNA MIR159 predicted
Species: 大花红景天  Species latin name: Rhodiola crenulata
TCM Name: Hongjingtian(红景天)  
TCM Resource (Sample number): 红景天(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR159q; Bsr-miR159o; aan-miR159o; apl-miR159ck; ave-miR159x; cmo-miR159r; csp-miR159ax; hcr-miR159q; ili-miR159l; nnu-miR159bt; por-miR159ca; pvl-miR159bf; rcr-miR159bn; sto-miR159bh;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0022   18.8   0.0  cm      164      185 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                   ???????  ????????          NC
                          ~~~~~~~-->>>>>>>-->>>>>>>>:::~~~~~~ CS
               MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCCuu*[11]> 196
                                 UUUGGA UGAAGGGAGCUC+ +
         sto-miR159bh   1 <[  0]*UUUGGAUUGAAGGGAGCUCUAC*[ 0]> 22
                          .......**********************...... PP

Targets

Predicted by TargetFinder

NM_001195272 ;   NM_001271634 ;   NM_005444 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;  

Predicted by TAPIR

NM_001195272 ;   NM_001271634 ;   NM_005444 ;   NM_005445 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;