The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. rcr-miR159bd

Accession: B57020573

Entry

ID: rcr-miR159bd
Alias: F27972.K000066.A25*
Sequence: UGGACUGAAGGGAGCUCCCU
Description: microRNA MIR159 predicted
Species: 大花红景天  Species latin name: Rhodiola crenulata
TCM Name: Hongjingtian(红景天)  
TCM Resource (Sample number): 红景天(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

aan-miR159l; bmj-miR159q; ccs-miR159bf; ili-miR159h; psu-miR159av; pvl-miR159au; rcr-miR159bd; sgl-miR159o; twi-miR159m; zof-miR159i;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0025   18.4   0.0  cm      166      185 ~~           1          20 + ~~ 1.00 5'&3' 0.60
                                                                 ???????  ????????          NC
                                                          ~~~~~~~>>>>>>>-->>>>>>>>:::~~~~~~ CS
                                               MIR159   1 <[165]*UGGAcuGAAGGGAGCUCCuu*[11]> 196
                                                                 UGGACUGAAGGGAGCUCC+U
                                          zof-miR159i   1 <[  0]*UGGACUGAAGGGAGCUCCCU*[ 0]> 20
                                                          .......********************...... PP

Targets

Predicted by TargetFinder

NM_001005407 ;   NM_001171740 ;   NM_001171741 ;   NM_001243540 ;   NM_001243541 ;   NM_001284292 ;   NM_001284293 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001319035 ;   NM_001320766 ;   NM_007110 ;   NM_014906 ;   NM_015565 ;   NM_015603 ;   NM_016210 ;   NM_021098 ;   NM_022895 ;   NM_175741 ;   NR_003682 ;   NR_048561 ;   NR_104409 ;  

Predicted by TAPIR

NM_001005407 ;   NM_001143984 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001171740 ;   NM_001171741 ;   NM_001243540 ;   NM_001243541 ;   NM_001284292 ;   NM_001284293 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001319035 ;   NM_001320766 ;   NM_001321920 ;   NM_001321922 ;   NM_001321923 ;   NM_001351089 ;   NM_001351090 ;   NM_001351091 ;   NM_001351092 ;   NM_001367846 ;   NM_003076 ;   NM_007110 ;   NM_015565 ;   NM_015603 ;   NM_016210 ;   NM_020447 ;   NM_021098 ;   NM_022465 ;   NM_022781 ;   NM_022895 ;   NM_033208 ;   NM_139071 ;   NM_173626 ;   NM_175732 ;   NM_175741 ;   NM_194293 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_003682 ;   NR_104409 ;   NR_120363 ;   NR_135841 ;   NR_135842 ;   NR_135843 ;   NR_135844 ;   NR_135845 ;   NR_135846 ;   NR_135847 ;   NR_135848 ;   NR_135849 ;   NR_135850 ;   NR_135851 ;   NR_135852 ;   NR_135853 ;   NR_135854 ;