The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. rcr-miR159am

Accession: B56904624

Entry

ID: rcr-miR159am
Alias: F230.L000037.A11
Sequence: UUGGACUGAAGGGAGCUCCCG
Description: microRNA MIR159 predicted
Species: 大花红景天  Species latin name: Rhodiola crenulata
TCM Name: Hongjingtian(红景天)  
TCM Resource (Sample number): 红景天(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

ccs-miR159ak; cmd-miR159g; dst-miR159l; est-miR159j; hof-miR159g; mca-miR159aj; pav-miR159am; pfr-miR159i; rcr-miR159am; rja-miR159an; sgl-miR159j; ssu-miR159g;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0014   19.5   0.0  cm      165      184 ~.           1          20 + ~. 1.00    5' 0.60
                                  ???????  ????????   NC
                          ~~~~~~~->>>>>>>-->>>>>>>>:: CS
               MIR159  13 <[152]*UUGGAcuGAAGGGAGCUCCu 184
                                 UUGGACUGAAGGGAGCUCC+
          ssu-miR159g   1 <[  0]*UUGGACUGAAGGGAGCUCCC 20
                          .......******************** PP

Targets

Predicted by TargetFinder

NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_022895 ;   NR_003682 ;   NR_029401 ;   NR_033908 ;   NR_104409 ;   NR_132119 ;   NR_135112 ;  

Predicted by TAPIR

NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_022895 ;   NM_152599 ;   NR_029401 ;   NR_033908 ;   NR_104409 ;   NR_132119 ;   NR_135112 ;