The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR8
  5. rch-miR8c

Accession: B56826398

Entry

ID: rch-miR8c
Alias: F27978.L000002.A25
Sequence: UAAUACUGUCAGGUAAAGAUG
Description: mir-8/mir-141/mir-200 microRNA precursor family predicted,partially
Species: 掌叶覆盆子  Species latin name: Rubus chingii
TCM Name: Fupenzi(覆盆子)  
TCM Resource (Sample number): 覆盆子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR8l; acr-miR8e; act-miR8b; apl-miR8; bca-miR8l; ccs-miR8b; cmd-miR8m; cof-miR8d; cph-miR8c; csu-miR8a; fmu-miR8h; gbi-miR8; hvu-miR8c; lcr-miR8a; ljc-miR8d; lji-miR8c; llu-miR8f; nja-miR8; nnu-miR8a; pcn-miR8; poe-miR8n; rch-miR8c; run-miR8b; sdi-miR8j; sjp-miR8a; tch-miR8c; tci-miR8; tfa-miR8e; tmo-miR8d; twi-miR8b; vtr-miR8; zof-miR8j;

Rfam Alignments

>> mir-8  mir-8/mir-141/mir-200 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0063   18.5   0.0  cm       48       68 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                                                              ?????????   ???? ????      NC
                                                        ~~~~~~>>>>>>>>>--->>>>->>>>~~~~~ CS
                                               mir-8  1 <[47]*uAAcACUGcCUGGUAAuGAUG*[8]> 76
                                                              UAA ACUG C GGUAA+GAUG
                                           zof-miR8j  1 <[ 0]*UAAUACUGUCAGGUAAAGAUG*[0]> 21
                                                        ......9********************..... PP

Targets

Predicted by TargetFinder

NM_001042594 ;   NM_001134830 ;   NM_001134831 ;   NM_001134832 ;   NM_001135175 ;   NM_001135176 ;   NM_001135177 ;   NM_001163334 ;   NM_001163335 ;   NM_001282766 ;   NM_001320445 ;   NM_001320446 ;   NM_001328664 ;   NM_001328665 ;   NM_001328666 ;   NM_001328667 ;   NM_001350503 ;   NM_001350504 ;   NM_004815 ;   NM_005215 ;   NM_015358 ;   NM_015450 ;   NM_017651 ;   NM_022490 ;   NM_031435 ;   NM_138780 ;   NM_152905 ;   NR_003102 ;   NR_003103 ;   NR_003104 ;   NR_110270 ;  

Predicted by TAPIR

NM_001042594 ;   NM_001128615 ;   NM_001128616 ;   NM_001135175 ;   NM_001135176 ;   NM_001135177 ;   NM_001163334 ;   NM_001163335 ;   NM_001289698 ;   NM_001321825 ;   NM_001328664 ;   NM_001328665 ;   NM_001328666 ;   NM_001328667 ;   NM_004815 ;   NM_005215 ;   NM_015450 ;   NM_018086 ;   NM_018376 ;   NM_019555 ;   NM_031435 ;   NM_138780 ;   NM_152905 ;   NR_003102 ;   NR_003103 ;   NR_003104 ;