The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. rch-miR166ap

Accession: B56664718

Entry

ID: rch-miR166ap
Alias: F316.M000039.A3D
Sequence: UCGGACCAGGCUUCAUUCCCCU
Description: MIR166 putative
Species: 掌叶覆盆子  Species latin name: Rubus chingii
TCM Name: Fupenzi(覆盆子)  
TCM Resource (Sample number): 覆盆子(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

cas-miR166c-3p; cas-miR166d; cas-miR166f-3p;

Bencao Homologs

Bjl-miR166j; Bsr-miR166n; apl-miR166n; asc-miR166h; bca-miR166g; bhi-miR166g; car-miR166o; cci-miR166f; cco-miR166as; ccs-miR166aq; cde-miR166g; cit-miR166k; cja-miR166j; cmd-miR166j; cmj-miR166h; cof-miR166as; cso-miR166l; csp-miR166j; dst-miR166o; eja-miR166i; epr-miR166ar; est-miR166m; fmu-miR166j; gbi-miR166at; gja-miR166m; gma-miR166l; gsi-miR166j; hcr-miR166az; hmu-miR166m; hof-miR166l; lba-miR166c; lfo-miR166m; ljc-miR166k; ljp-miR166j; llc-miR166m; mal-miR166k; mca-miR166ap; mch-miR166l; nnu-miR166ao; nte-miR166k; pav-miR166j; pcl-miR166m; pfr-miR166ax; poe-miR166i; por-miR166n; pvl-miR166ax; rch-miR166ap; sch-miR166n; sdf-miR166k; sdi-miR166i; sgl-miR166f; sor-miR166k; ssa-miR166k; tki-miR166b; vof-miR166l;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   5.3e-05   24.3   0.0  cm      101      122 ~~           1          22 + ~~ 1.00 5'&3' 0.59
                                                               ???  ??????  ?????????      NC
                                                        ~~~~~~~>>>-->>>>>>-->>>>>>>>>~~~~~ CS
                                            mir-166   1 <[100]*UCGGACCAGGCUUCAUUCCcCu*[4]> 126
                                                               UCGGACCAGGCUUCAUUCCCCU
                                        vof-miR166l   1 <[  0]*UCGGACCAGGCUUCAUUCCCCU*[0]> 22
                                                        .......**********************..... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR

NM_017811 ;