The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. rch-miR166ao

Accession: B56664715

Entry

ID: rch-miR166ao
Alias: F316.L000021.A11
Sequence: UCGGAUCAGGCUUCAUUCCCC
Description: mir-166 microRNA precursor predicted,partially
Species: 掌叶覆盆子  Species latin name: Rubus chingii
TCM Name: Fupenzi(覆盆子)  
TCM Resource (Sample number): 覆盆子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR166h; cco-miR166ar; cof-miR166aq; cso-miR166k; csu-miR166k; fmu-miR166i; fsu-miR166n; gbi-miR166as; gja-miR166l; hcr-miR166ax; nnu-miR166an; pfr-miR166aw; pvl-miR166aw; rch-miR166ao; rcr-miR166m; sar-miR166h; smi-miR166k; tch-miR166h;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0003   21.7   0.0  cm      101      121 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                                 ???  ??????  ????????      NC
                          ~~~~~~~>>>-->>>>>>-->>>>>>>>~~~~~ CS
              mir-166   1 <[100]*UCGGACCAGGCUUCAUUCCcC*[5]> 126
                                 UCGGA CAGGCUUCAUUCCCC
          tch-miR166h   1 <[  0]*UCGGAUCAGGCUUCAUUCCCC*[0]> 21
                          .......*********************..... PP

Targets

Predicted by TargetFinder

NM_001202504 ;   NM_001318511 ;   NM_004715 ;   NM_048368 ;   NM_080657 ;  

Predicted by TAPIR

NM_001202504 ;   NM_001318511 ;   NM_004715 ;   NM_048368 ;