The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR162
  5. rch-miR162a

Accession: B56550767

Entry

ID: rch-miR162a
Alias: F45.L000039.A3D
Sequence: UCGAUAAACCUCUGCAUCCAG
Description: MIR162 putative
Species: 掌叶覆盆子  Species latin name: Rubus chingii
TCM Name: Fupenzi(覆盆子)  
TCM Resource (Sample number): 覆盆子(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

aau-miR162; aly-miR162a-3p; aly-miR162b-3p; ath-miR162a-3p; ath-miR162b-3p; bra-miR162-3p; cme-miR162; cpa-miR162a; csi-miR162-3p; eun-miR162-3p; fve-miR162-3p; ghr-miR162a; gma-miR162b; gma-miR162c; hpe-miR162a; htu-miR162a; lus-miR162a; lus-miR162b; mdm-miR162a; mdm-miR162b; mes-miR162; mtr-miR162; nta-miR162a; nta-miR162b; osa-miR162a; pde-miR162; ppe-miR162; ptc-miR162a; ptc-miR162b; rco-miR162; sbi-miR162; sly-miR162; stu-miR162a-3p; stu-miR162b-3p; tcc-miR162; vun-miR162; vvi-miR162;

Bencao Homologs

Bjl-miR162a; Bswzz-miR162a; aan-miR162; apl-miR162a; ave-miR162a; bca-miR162; bhi-miR162a; bja-miR162; bmj-miR162a; car-miR162a; cas-miR162; cba-miR162; cco-miR162a; cja-miR162; cma-miR162; cmd-miR162a; cmi-miR162; cmj-miR162; cmo-miR162a; cof-miR162a; cso-miR162; csp-miR162; csu-miR162a; dlo-miR162a; dst-miR162a; ehu-miR162a; epr-miR162a; esn-miR162; est-miR162a; fmu-miR162; gbi-miR162a; gja-miR162; gmc-miR162a; gpe-miR162a; gsi-miR162; ili-miR162a; lba-miR162; lcr-miR162; lfo-miR162a; ljn-miR162; llu-miR162; mal-miR162; nja-miR162a; pav-miR162; pmu-miR162a; poe-miR162; por-miR162a; ppr-miR162; psu-miR162a; pvl-miR162; rch-miR162a; rja-miR162; sch-miR162; sdi-miR162a; smi-miR162; sto-miR162a; tch-miR162a; tfa-miR162a; tki-miR162; tmo-miR162a; twi-miR162; vum-miR162;

Rfam Alignments

>> MIR162_2  microRNA MIR162_2
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?      0.04   16.9   0.0  cm       71       91 ~.           1          21 + ~] 1.00    5' 0.48
                                                                 ????? ???? ???? ????? NC
                                                           ~~~~~~>>>>>->>>>->>>>->>>>> CS
                                               MIR162_2  3 <[68]*UCGAUAAaCCUCUGCAuCCAG 91
                                                                 UCGAUAAACCUCUGCAUCCAG
                                             vum-miR162  1 <[ 0]*UCGAUAAACCUCUGCAUCCAG 21
                                                           ......********************9 PP

Targets

Predicted by TargetFinder

NM_001347886 ;   NM_017514 ;   NM_017539 ;  

Predicted by TAPIR

NM_001347886 ;   NM_017514 ;   NM_017539 ;