The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. rch-miR159af

Accession: B56542246

Entry

ID: rch-miR159af
Alias: F14.L000027.A3D
Sequence: UUUGGAUUGAAGGGAGCUCUU
Description: MIR159 putative
Species: 掌叶覆盆子  Species latin name: Rubus chingii
TCM Name: Fupenzi(覆盆子)  
TCM Resource (Sample number): 覆盆子(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR159b-3p; ath-miR159b-3p; cas-miR159b-3p; cas-miR159c-3p; lus-miR159c;

Bencao Homologs

Bjl-miR159f; aan-miR159e; acn-miR159c; acr-miR159e; aeu-miR159b; ala-miR159g; apl-miR159ag; ath-miR159e; ave-miR159g; bca-miR159f; cas-miR159d; cco-miR159ag; ccs-miR159ag; cfe-miR159c; cit-miR159e; cmd-miR159e; cmj-miR159e; cmo-miR159g; cof-miR159f; csp-miR159af; dst-miR159g; ehu-miR159f; est-miR159f; fsu-miR159e; gbi-miR159g; gel-miR159d; hcr-miR159e; lfo-miR159g; lpu-miR159ag; nca-miR159f; nnu-miR159ag; pav-miR159ag; pcl-miR159f; pcn-miR159f; por-miR159ag; psu-miR159af; pvl-miR159ag; rch-miR159af; rcr-miR159ag; rja-miR159ag; sar-miR159e; sba-miR159e; sch-miR159e; sdi-miR159e; sgl-miR159g; smi-miR159ag; sto-miR159ag; tch-miR159c; tci-miR159f; tmo-miR159e; twi-miR159f;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0017   19.1   0.0  cm      164      184 ~~           1          21 + ~~ 1.00 5'&3' 0.43
                                                                     ???????  ????????         NC
                                                            ~~~~~~~-->>>>>>>-->>>>>>>>::~~~~~~ CS
                                                 MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCCu*[12]> 196
                                                                   UUUGGA UGAAGGGAGCUC+U
                                            twi-miR159f   1 <[  0]*UUUGGAUUGAAGGGAGCUCUU*[ 0]> 21
                                                            .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001080534 ;   NM_001167671 ;   NM_001167672 ;   NM_001195272 ;   NM_001271634 ;   NM_001308220 ;   NM_001329919 ;   NM_005444 ;   NM_005578 ;   NM_014906 ;   NM_033266 ;   NM_138694 ;   NM_170724 ;   NR_003950 ;   NR_048561 ;   NR_073390 ;   NR_146089 ;  

Predicted by TAPIR

NM_001080534 ;   NM_001170629 ;   NM_001195272 ;   NM_001271634 ;   NM_001329919 ;   NM_005444 ;   NM_014906 ;   NM_020920 ;   NM_054107 ;   NM_138694 ;   NM_170724 ;   NR_048561 ;   NR_073390 ;   NR_146089 ;