The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR24
  5. pvl-miR24a

Accession: B55880667

Entry

ID: pvl-miR24a
Alias: F2534.L000752.A25*
Sequence: UGGCUCAGUUCAGCAGGAACA
Description: mir-24 microRNA precursor family predicted,partially
Species: 夏枯草  Species latin name: Prunella vulgaris
TCM Name: Xiakucao(夏枯草)  
TCM Resource (Sample number): 夏枯草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR24e; Bswzz-miR24a; asc-miR24d; bca-miR24c; bch-miR24e; bhi-miR24b; cci-miR24b; cfe-miR24c; cit-miR24aq; cmd-miR24f; cof-miR24c; csp-miR24d; esn-miR24c; fmu-miR24c; hcr-miR24h; ljp-miR24c; llu-miR24b; pfr-miR24b; poe-miR24i; ppr-miR24b; pvl-miR24a; sar-miR24b; sgi-miR24b; sor-miR24ap; tki-miR24b; vph-miR24f; zof-miR24c;

Rfam Alignments

>> mir-24  mir-24 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00016   22.6   0.0  cm       44       64 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                                                 ????????? ???          NC
                                                       ~~~~~~____>>>>>>>>>->>>----~~~~~ CS
                                             mir-24  1 <[43]*UGGCUCAGuUCAGCAGGAACA*[4]> 68
                                                             UGGCUCAGUUCAGCAGGAACA
                                         zof-miR24c  1 <[ 0]*UGGCUCAGUUCAGCAGGAACA*[0]> 21
                                                       ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000458 ;   NM_001005180 ;   NM_001078175 ;   NM_001078177 ;   NM_001144026 ;   NM_001144027 ;   NM_001144028 ;   NM_001165923 ;   NM_001199563 ;   NM_001281834 ;   NM_001281835 ;   NM_001281836 ;   NM_001281837 ;   NM_001281838 ;   NM_001281853 ;   NM_001304286 ;   NM_001304462 ;   NM_001304465 ;   NM_001304466 ;   NM_001322117 ;   NM_001322118 ;   NM_001322119 ;   NM_001372327 ;   NM_002862 ;   NM_007073 ;   NM_014434 ;   NM_145278 ;   NM_147147 ;   NR_036109 ;   NR_134503 ;   NR_157588 ;  

Predicted by TAPIR

NM_001005180 ;   NM_001144026 ;   NM_001144027 ;   NM_001144028 ;   NM_001199563 ;   NM_001206864 ;   NM_001281834 ;   NM_001281835 ;   NM_001281836 ;   NM_001281837 ;   NM_001281838 ;   NM_001281853 ;   NM_001322117 ;   NM_001322118 ;   NM_001322119 ;   NM_002862 ;   NM_007073 ;   NM_014434 ;   NM_018571 ;   NM_024690 ;   NM_145278 ;   NM_147147 ;   NR_036109 ;   NR_134503 ;   NR_157588 ;   NR_158224 ;