The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. pvl-miR122b

Accession: B55856729

Entry

ID: pvl-miR122b
Alias: F1789.N000007.A11
Sequence: UGGAGUGUGGCAAUGGUGUUUGU
Description: mir-122 microRNA precursor predicted,partially
Species: 夏枯草  Species latin name: Prunella vulgaris
TCM Name: Xiakucao(夏枯草)  
TCM Resource (Sample number): 夏枯草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122c; Bswzz-miR122c; cmd-miR122c; cof-miR122c; pvl-miR122b;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0071   18.6   0.0  cm        9       31 ~~           1          23 + ~~ 1.00 5'&3' 0.48
                              ?  ??????? ???????????        NC
                         ~~~~~<--<<<<<<<-<<<<<<<<<<<_~~~~~~ CS
              mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUGU*[43]> 74
                              UGGAGUGUG CAAUGGUGUUUGU
          pvl-miR122b  1 <[0]*UGGAGUGUGGCAAUGGUGUUUGU*[ 0]> 23
                         .....***********************...... PP

Targets

Predicted by TargetFinder

NM_001369694 ;   NM_001369695 ;   NM_001370339 ;   NM_001370340 ;   NM_001370341 ;   NM_002128 ;   NM_198571 ;   NR_027136 ;   NR_039899 ;  

Predicted by TAPIR

NM_001369694 ;   NM_001369695 ;   NM_001370339 ;   NM_001370340 ;   NM_001370341 ;   NM_002128 ;   NM_198571 ;   NR_024452 ;   NR_027136 ;   NR_039899 ;   NR_122047 ;