The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. pvl-miR122a

Accession: B55856728

Entry

ID: pvl-miR122a
Alias: F1789.N000002.A25
Sequence: UGGAGUGUGACAAUGGUGUUUGU
Description: mir-122 microRNA precursor predicted,partially
Species: 夏枯草  Species latin name: Prunella vulgaris
TCM Name: Xiakucao(夏枯草)  
TCM Resource (Sample number): 夏枯草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122a; Bswzz-miR122a; acr-miR122a; act-miR122a; apa-miR122a; asc-miR122; bca-miR122a; bci-miR122; bhi-miR122a; bpi-miR122a; car-miR122a; cba-miR122a; cfe-miR122a; cit-miR122a; cma-miR122a; cmd-miR122a; cof-miR122a; cpe-miR122; cri-miR122; csm-miR122a; cso-miR122; csp-miR122a; csu-miR122; efo-miR122a; esn-miR122; fmu-miR122a; fsu-miR122a; gel-miR122a; gja-miR122; hcr-miR122a; kga-miR122a; ljc-miR122a; ljo-miR122a; llu-miR122a; mal-miR122a; pcn-miR122a; pfr-miR122a; poe-miR122a; ppr-miR122a; pvl-miR122a; run-miR122; sdf-miR122; sgi-miR122a; sor-miR122; tch-miR122a; tci-miR122a; tki-miR122a; zof-miR122a;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0031   19.9   0.0  cm        9       31 ~~           1          23 + ~~ 1.00 5'&3' 0.43
                                                            ?  ??????? ???????????        NC
                                                       ~~~~~<--<<<<<<<-<<<<<<<<<<<_~~~~~~ CS
                                            mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUGU*[43]> 74
                                                            UGGAGUGUGACAAUGGUGUUUGU
                                        zof-miR122a  1 <[0]*UGGAGUGUGACAAUGGUGUUUGU*[ 0]> 23
                                                       .....***********************...... PP

Targets

Predicted by TargetFinder

NM_001112808 ;   NM_001135651 ;   NM_001199327 ;   NM_015978 ;   NR_039899 ;  

Predicted by TAPIR

NM_001112808 ;   NM_001199327 ;   NM_015978 ;   NR_039899 ;