The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR194
  5. pvl-miR194c

Accession: B55994211

Entry

ID: pvl-miR194c
Alias: F17409.N000013.A25
Sequence: UGUAACAGCAACUCCAUGUGGAA
Description: mir-194 microRNA precursor family predicted,partially
Species: 夏枯草  Species latin name: Prunella vulgaris
TCM Name: Xiakucao(夏枯草)  
TCM Resource (Sample number): 夏枯草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR194c; apa-miR194b; bca-miR194c; bhi-miR194c; bpi-miR194b; cas-miR194c; cfe-miR194c; cmd-miR194c; cri-miR194b; fsu-miR194b; gel-miR194c; hcr-miR194b; lji-miR194b; mpu-miR194b; pgi-miR194c; poe-miR194c; ppr-miR194c; pvl-miR194c; sch-miR194b; sdi-miR194c; sgi-miR194c; sor-miR194c; tki-miR194b; zof-miR194c;

Rfam Alignments

>> mir-194  mir-194 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0014   21.1   0.0  cm       15       37 ~~           1          23 + ~~ 1.00 5'&3' 0.43
                                                                   ????????? ?????  ????        NC
                                                            ~~~~~~-<<<<<<<<<-<<<<<--<<<<_~~~~~~ CS
                                                 mir-194  1 <[14]*UGUAACAGCAACuCCAUGUGGAa*[48]> 85
                                                                  UGUAACAGCAACUCCAUGUGGAA
                                             zof-miR194c  1 <[ 0]*UGUAACAGCAACUCCAUGUGGAA*[ 0]> 23
                                                            ......***********************...... PP

Targets

Predicted by TargetFinder

NM_001371457 ;   NM_002410 ;   NR_135738 ;  

Predicted by TAPIR