The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR7
  5. ppr-miR7f

Accession: B55179401

Entry

ID: ppr-miR7f
Alias: F124604.N000106.A25*
Sequence: UGGAAGACUUGUGAUUUUGUUGU
Description: mir-7 microRNA precursor predicted,partially
Species: 前胡  Species latin name: Peucedanum praeruptorum
TCM Name: Qianhu(前胡)  
TCM Resource (Sample number): 前胡(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR7m; cmd-miR7k; ljo-miR7d; ppr-miR7f; sgi-miR7f; tki-miR7k;

Rfam Alignments

>> mir-7  mir-7 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0029   21.0   0.0  cm       15       37 ~~           1          23 + ~~ 1.00 5'&3' 0.35
                                                              ??       ????? ???????       NC
                                                       ~~~~~~-<<-------<<<<<-<<<<<<<~~~~~~ CS
                                              mir-7  1 <[14]*UGGAAGACUAGuGAuUUUgUUGU*[51]> 88
                                                             UGGAAGACU GUGAUUUUGUUGU
                                          tki-miR7k  1 <[ 0]*UGGAAGACUUGUGAUUUUGUUGU*[ 0]> 23
                                                       ......***********************...... PP

Targets

Predicted by TargetFinder

NM_001048166 ;   NM_001080554 ;   NM_001080555 ;   NM_001206842 ;   NM_001206843 ;   NM_001206845 ;   NM_001256316 ;   NM_001282936 ;   NM_001282937 ;   NM_001282938 ;   NM_001282939 ;   NM_001322151 ;   NM_001322157 ;   NM_001322159 ;   NM_001367358 ;   NM_001367359 ;   NM_001367360 ;   NM_001367361 ;   NM_001367362 ;   NM_001367363 ;   NM_001367364 ;   NM_001368007 ;   NM_003035 ;   NM_020765 ;   NM_031289 ;   NM_031422 ;   NM_153823 ;   NR_039867 ;  

Predicted by TAPIR

NM_001048166 ;   NM_001256316 ;   NM_001282936 ;   NM_001282937 ;   NM_001282938 ;   NM_001282939 ;   NM_001330648 ;   NM_001356429 ;   NM_003035 ;   NM_020765 ;   NM_024677 ;   NM_031422 ;   NR_039867 ;