The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR23
  5. ppr-miR23a

Accession: B55144549

Entry

ID: ppr-miR23a
Alias: F19267.L000008.A25
Sequence: AUCACAUUGCCAGGGAUUACC
Description: microRNA mir-23 predicted
Species: 前胡  Species latin name: Peucedanum praeruptorum
TCM Name: Qianhu(前胡)  
TCM Resource (Sample number): 前胡(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR23a; Bswzz-miR23a; acr-miR23a; asc-miR23a; bca-miR23a; bch-miR23b; bpi-miR23a; cci-miR23a; cfe-miR23a; cit-miR23aa; cmd-miR23b; cof-miR23a; hcr-miR23b; ljp-miR23a; llu-miR23a; poe-miR23aa; ppr-miR23a; sch-miR23a; sdf-miR23a; sor-miR23ac; tki-miR23a; zof-miR23a;

Rfam Alignments

>> mir-23  microRNA mir-23
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00012   23.3   0.0  cm       47       67 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                              ???      ?????????         NC
                                                        ~~~~~~>>>------>>>>>>>>>:::~~~~~ CS
                                              mir-23  1 <[46]*AUCACAUUGCCAGGGAuUuCC*[8]> 75
                                                              AUCACAUUGCCAGGGAUU+CC
                                          zof-miR23a  1 <[ 0]*AUCACAUUGCCAGGGAUUACC*[0]> 21
                                                        ......*********************..... PP

Targets

Predicted by TargetFinder

NM_001024611 ;   NM_001257197 ;   NM_001257198 ;   NM_003590 ;  

Predicted by TAPIR

NM_001257197 ;   NM_001257198 ;   NM_001271675 ;   NM_001278209 ;   NM_001278210 ;   NM_001319238 ;   NM_001319239 ;   NM_001350264 ;   NM_001350265 ;   NM_001355457 ;   NM_003590 ;   NM_005124 ;