The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. ppr-miR122e

Accession: B55158509

Entry

ID: ppr-miR122e
Alias: F37555.M000053.A25
Sequence: UGGAGUGUGACAAUGGUGUUUG
Description: mir-122 microRNA precursor predicted,partially
Species: 前胡  Species latin name: Peucedanum praeruptorum
TCM Name: Qianhu(前胡)  
TCM Resource (Sample number): 前胡(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122g; Bswzz-miR122e; acr-miR122c; act-miR122b; apa-miR122c; bca-miR122b; bhi-miR122b; bpi-miR122b; car-miR122e; cba-miR122d; cfe-miR122d; cit-miR122b; cma-miR122b; cmd-miR122f; cof-miR122d; csm-miR122b; csp-miR122e; efo-miR122c; fmu-miR122e; fsu-miR122b; gel-miR122c; hcr-miR122b; kga-miR122b; ljc-miR122e; ljn-miR122; ljo-miR122b; llu-miR122b; mal-miR122b; pcn-miR122d; pfr-miR122b; poe-miR122b; ppr-miR122e; pvl-miR122c; sgi-miR122b; tch-miR122b; tci-miR122b; tki-miR122b; zof-miR122b;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0079   18.4   0.0  cm        9       30 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                                ?  ??????? ???????????       NC
                                                           ~~~~~<--<<<<<<<-<<<<<<<<<<<~~~~~~ CS
                                                mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUG*[44]> 74
                                                                UGGAGUGUGACAAUGGUGUUUG
                                            zof-miR122b  1 <[0]*UGGAGUGUGACAAUGGUGUUUG*[ 0]> 22
                                                           .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001112808 ;   NM_001135651 ;   NM_001199327 ;   NM_001303494 ;   NM_012281 ;   NM_014292 ;   NM_015978 ;   NR_004382 ;   NR_024183 ;   NR_027136 ;   NR_039899 ;  

Predicted by TAPIR

NR_024183 ;   NR_027136 ;   NR_039899 ;