Entry

ID: pgi-miR159d
Alias: F9005.J000007.A11*
Sequence: UUUGGAUUGAAGGGAGCUU
Description: microRNA MIR159 predicted
Species: 人参 Species latin name: Panax ginseng
TCM Name: Renshen(人参) Renshenye(人参叶) Hongshen(红参)
TCM Resource (Sample number): 红参(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR159l; ala-miR159o; apl-miR159be; cco-miR159be; cof-miR159m; csm-miR159i; cso-miR159k; csp-miR159am; dst-miR159q; ehu-miR159k; fmu-miR159f; gja-miR159f; gma-miR159av; ini-miR159l; lfo-miR159k; lpu-miR159bn; mca-miR159at; nnu-miR159ay; nte-miR159i; pav-miR159au; pgi-miR159d; por-miR159bb; smi-miR159as; sto-miR159as; tci-miR159j; vum-miR159m;

Rfam Alignments

>> MIR159  microRNA MIR159
rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0073   16.5   0.0  cm      164      181 ~.           1          18 + ~. 1.00    5' 0.44
                       ???????  ??????? NC
              ~~~~~~~-->>>>>>>-->>>>>>> CS
   MIR159  14 <[150]*uUUGGAcuGAAGGGAGCU 181
                     UUUGGA UGAAGGGAGCU
vum-miR159m   1 <[  0]*UUUGGAUUGAAGGGAGCU 18
              .......****************** PP

Targets

Predicted by TargetFinder

NM_001077484 ; NM_001167671 ; NM_001167672 ; NM_001170629 ; NM_001195272 ; NM_001249 ; NM_001271634 ; NM_001278387 ; NM_001278388 ; NM_001278389 ; NM_001278390 ; NM_001288824 ; NM_001288825 ; NM_001288826 ; NM_001288827 ; NM_001288828 ; NM_001304349 ; NM_001308220 ; NM_001321985 ; NM_001321986 ; NM_001321987 ; NM_001321988 ; NM_001350233 ; NM_001351444 ; NM_001368133 ; NM_001553 ; NM_002730 ; NM_005260 ; NM_005370 ; NM_005444 ; NM_005445 ; NM_005578 ; NM_006456 ; NM_007361 ; NM_014906 ; NM_015021 ; NM_018380 ; NM_020920 ; NM_025057 ; NM_030674 ; NM_031889 ; NM_033266 ; NM_054107 ; NM_138694 ; NM_152544 ; NM_170724 ; NM_207518 ; NR_048561 ; NR_073390 ; NR_120611 ; NR_134315 ; NR_135572 ;

Predicted by TAPIR

NM_001012761 ; NM_001079692 ; NM_001080534 ; NM_001135109 ; NM_001170629 ; NM_001195272 ; NM_001206671 ; NM_001206672 ; NM_001249 ; NM_001261827 ; NM_001261828 ; NM_001304349 ; NM_001307960 ; NM_001308026 ; NM_001321985 ; NM_001329919 ; NM_001346690 ; NM_001346691 ; NM_001346692 ; NM_001346694 ; NM_001366509 ; NM_001366510 ; NM_001366511 ; NM_001522 ; NM_003609 ; NM_014906 ; NM_020920 ; NM_024557 ; NM_025057 ; NM_138694 ; NM_170724 ; NM_207518 ; NR_048561 ; NR_134315 ; NR_135572 ; NR_144497 ;

The Bencao (Herbal) Database（本草数据库）

Accession: B53356904